RNA id: TCONS_00061992


Basic Information

Item Value
RNA id TCONS_00061992
length 737
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_030999
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22455566 ~ 22457289 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCACTCGTTTTCACAGACTGAGATTTCCAATcattctcttctttttttttgtacagtaacCTGAGCTCTTGTGTTGCAGGACATAATGGTGTTGCCTTCAAAACCACTATATCCTCACCAATCTGTTCAATGACTGGACTAGCTGGTTTTATTGGAGGAGTGAAGCATGTCGCTTTATCAGATCCATTTTCATAAATAAGAATGCAGGAACCTGGATGGTTTGTGTGACTTTTATATACAACCAAAAATGTTGATGAGTGACTGCCATATGAACATTTGAGCtcattaaatatttccaaatgctTCTTCATAGTCTCTCTGATACTTCCTGTGAGCCAAGTTTCAGACACAGAATTGGGGTTCTTATTAGAATTTCTCCTCATTATTTCAGGTTTCAGGAAATCTCCTTGTTTAGAAAGCAGGTCGTCTGGCAGATCAAGAGAAGTGAATGTGTAACACACCACATTCTCAAAACTAACATCCAACAAATATTCATCTAAACTATTGTTCACTTCAGCTCCAGTTTCCAGCAGCTGTTGAAGAATCTTCTCAACTGCTTTTGATTCGGTTTCTTTCACTCTGATCCACTCCACAATATCACTTATGTTAAATGGAGACTCATGATGAGCTTGTAGAAGGTCTGTCAGAGCACTGATGTCTTTTTCACAGGCTTGAACTGACTGGATTGTGGATTTAATTCTGTCTTGTTTGTAAGTCTGACAGTgtctcttcatgt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061990 lncRNA downstream 220408 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061989 lncRNA downstream 220514 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00060220 lncRNA downstream 372759 22081595 ~ 22082807 (-) True XLOC_030992
TCONS_00060218 lncRNA downstream 409932 22040277 ~ 22045634 (-) True XLOC_030991
TCONS_00060217 lncRNA downstream 413710 22040277 ~ 22041856 (-) False XLOC_030991
TCONS_00061530 lncRNA upstream 49156 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00060247 lncRNA upstream 499606 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060246 lncRNA upstream 499606 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060244 lncRNA upstream 499606 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060248 lncRNA upstream 499606 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060224 mRNA downstream 85650 22363015 ~ 22369916 (-) True XLOC_030996
TCONS_00060222 mRNA downstream 324629 22115250 ~ 22130937 (-) True XLOC_030994
TCONS_00060219 mRNA downstream 372648 22073710 ~ 22082918 (-) False XLOC_030992
TCONS_00060216 mRNA downstream 402714 22027588 ~ 22052852 (-) False XLOC_030991
TCONS_00060215 mRNA downstream 428209 22021142 ~ 22027357 (-) True XLOC_030990
TCONS_00060227 mRNA upstream 7797 22465086 ~ 22501663 (-) True XLOC_031000
TCONS_00060228 mRNA upstream 58058 22515347 ~ 22544151 (-) True XLOC_031002
TCONS_00060229 mRNA upstream 93325 22550614 ~ 22573624 (-) False XLOC_031003
TCONS_00060230 mRNA upstream 93328 22550617 ~ 22573624 (-) False XLOC_031003
TCONS_00060231 mRNA upstream 93328 22550617 ~ 22573673 (-) False XLOC_031003
TCONS_00060226 other downstream 16971 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 17583 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 221061 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 358658 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 503432 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 765412 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 873864 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 1246168 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 1300644 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 1311088 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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