RNA id: TCONS_00060233


Basic Information

Item Value
RNA id TCONS_00060233
length 1131
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_031004
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22585269 ~ 22602979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTCAGATCAACTTTTGGAAAACCTTCGCCCTGATCTGATTAAAGGTTTATCAGAGCGCGTCATCAATGGTTTGCTGGATGATCTTCAGCAAAAAAAGGTGTTTGGCGAAGAGGAGATTGAAGACATCCAGCATAGGATGAAAACACGGGCTGATCAAGCTCGCCATGTGATTGACGATGTGAAGCGAAAAGGAGTCAAAGCAAGTGAAATTATGCTAGCAAGCTTGAAGACCAGAGACCCTCATCTCTACGACACCCTGGGCATTGAAAGACTATTAGTACCAGTTCCTGAGACAGAGCTGACCCCTAGTCAACTTTCTGAAACGACTGGCTGTTCTACGGataaGACCAACACCATGAATGAGTACGAGATGAAGAGCAATCCACGTGGACTTTGTctaatttttaataatgaaaactttAAAGACCCCGACATGAAACGACATGGATCCCAAATGGATACCGCTTCTCTGAAGGACTTGTTTGAATGGCTGGGCTTTTCGGTTGAAATCAAGCAAGACCAGACTGTATCTGCCATGAAGAGGACTTTAAAAGAATACAGTGAGGATCGCAAGCATGGAGACTGCTTCGTCTGTTGTGTTCTGAGTCATGGAAATGAGTCTGGTGTTCTCGGATCTGATGAAAAGATATGTCCTGTGGATGACATCACATCCCCATTTAATGGAGCCAACTGCTCCTCTCTTGCCGGCAAACCCAAAGTGTTCTTCATCCAGGCATGTAGAGGGCATGAAATTCAGAGCAAAGTGATGGTTGCAGATGGTTCTGGTGGTAGTCGTACGCAAAAACCTGGCAGAGTATCTGTCAGCATTCCCAAAGATTCAGATTTTCTGATTGCCAGGTCCACTGTAGAGGGGTATGTGTCGATCCGTGATAGAACTAGTGGAACCTGGTTTATACAATCCCTTTGTGAGAATTTAAAAGAAGGAAGTAAACGAGGCCACGACATCTTGATGATTCTCACAAAGGTCAATAATGACGTAAGCCGTAAAGAAGGctctttaaaagttaaaaatgaaatagtAGATGCAAAAGTGACCCCTCAGCCTATTTTCACTTTGAGGAAGCTTCTCATTTTCAGACCTCTGAAGAAAACAGGCCGGTTCTCTTAA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0035877 death effector domain binding molecular_function
GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-186 Predicted to enable cysteine-type endopeptidase activity involved in apoptotic signaling pathway; cysteine-type endopeptidase activity involved in execution phase of apoptosis; and death effector domain binding activity. Predicted to be involved in activation of cysteine-type endopeptidase activity involved in apoptotic process and apoptotic process. Predicted to act upstream of or within proteolysis and regulation of apoptotic process. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDART00000172353

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061530 lncRNA downstream 75205 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00061992 lncRNA downstream 127980 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061991 lncRNA downstream 129275 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061990 lncRNA downstream 350111 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061989 lncRNA downstream 350217 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00060247 lncRNA upstream 366771 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060246 lncRNA upstream 366771 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060244 lncRNA upstream 366771 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060248 lncRNA upstream 366771 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060245 lncRNA upstream 370829 22960953 ~ 22967609 (-) True XLOC_031008
TCONS_00060231 mRNA downstream 11596 22550617 ~ 22573673 (-) False XLOC_031003
TCONS_00060229 mRNA downstream 11645 22550614 ~ 22573624 (-) False XLOC_031003
TCONS_00060230 mRNA downstream 11645 22550617 ~ 22573624 (-) False XLOC_031003
TCONS_00060232 mRNA downstream 11645 22557349 ~ 22573624 (-) True XLOC_031003
TCONS_00060228 mRNA downstream 41118 22515347 ~ 22544151 (-) True XLOC_031002
TCONS_00060235 mRNA upstream 202 22590326 ~ 22600881 (-) False XLOC_031004
TCONS_00060236 mRNA upstream 3152 22593276 ~ 22602780 (-) False XLOC_031004
TCONS_00060237 mRNA upstream 6959 22597083 ~ 22602979 (-) True XLOC_031004
TCONS_00060238 mRNA upstream 15406 22605530 ~ 22619879 (-) False XLOC_031005
TCONS_00060239 mRNA upstream 19026 22609150 ~ 22615087 (-) False XLOC_031005
TCONS_00060226 other downstream 146674 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 147286 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 350764 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 488361 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 633135 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 632577 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 741029 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 1113333 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 1167809 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 1178253 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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