RNA id: TCONS_00060237


Basic Information

Item Value
RNA id TCONS_00060237
length 879
RNA type mRNA
GC content 0.53
exon number 6
gene id XLOC_031004
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22585269 ~ 22602979 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGCAGGTTGGGCTGTACGACGTTCCGCCCTTCTCCTCTTTGTGACCAACGCTGCGTGTGTTACTGGAGCGGATTAATAACTCGTATAAAAGatgcaaGGAAACAGAGGACCCCGTTCAGAGCAGCAGAATCACGGCCCACAGCGACAGCAGCCCAACCCCCAACAGGAGCAGCAGAGGAAGCCCACCGGAGCCGACAGCAATGGACAACACACCGATGCTGGAGAGCAGAGCAGCCCTAATGCTGGTTTCACTATAGACCTGCAGAACTTCAAGAAGCCTGGTGAGAAGACCTACACGCAGAGAAGTCGGCTGTTTGTGGGCAACCTACCTGCTGGGACCACAGAGGAAGATGTGGAGAAGCTTTTCTCCAAGTATGGCAAGGCTTCTGAGATTTTTATCAACAAGGATCGAGGCTTTGGCTTCATCAGGCTGGAAACGAAGACGCTTGCGGACATCGCAAAAGCTGAACTGGATGACACCATATTCCGTGGACGGCAGATTCGTGTGCGATTTGCCACCCATGGTGCTGCGCTGACGGTTAAAAACCTGCCTCAGTTTGTGTCCAATGAGCTTCTGGAGGAGGCCTTCTCCATGTTTGGTCCCATCGAACGTGCCATAGTCATCGTTGATGACCGTGGCAGGCCAACTGGGAAGGGAATTGTGGAGTTTGCTAACAAACCATCTGCCAGGAAAGCTCTGGACCGGTGTGGAGATGGAGCTTTTCTTCTTACTGCATTCCCCCGGCCTGTTACCATTGAGCCAATGGAGCAGCTTGATGAGGAAGAGGGGCTTCCTGAGAGACTCATTAACAAAAACCCAGTATATCACAAAGAGCGTGAGCAGCCTCCCCGCTTCGCCCAACCAGGCTCATTTGA

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0097153 cysteine-type endopeptidase activity involved in apoptotic process molecular_function
GO:0035877 death effector domain binding molecular_function
GO:0097199 cysteine-type endopeptidase activity involved in apoptotic signaling pathway molecular_function
GO:0097200 cysteine-type endopeptidase activity involved in execution phase of apoptosis molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-713 Predicted to enable RNA binding activity. Acts upstream of or within central nervous system development; otic vesicle development; and somite development. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability 34. Orthologous to human NONO (non-POU domain containing octamer binding).

Ensembl:

ensembl_id ENSDART00000146287

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061530 lncRNA downstream 87019 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00061992 lncRNA downstream 139794 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061991 lncRNA downstream 141089 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061990 lncRNA downstream 361925 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061989 lncRNA downstream 362031 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00060247 lncRNA upstream 353916 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060246 lncRNA upstream 353916 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060244 lncRNA upstream 353916 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060248 lncRNA upstream 353916 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060245 lncRNA upstream 357974 22960953 ~ 22967609 (-) True XLOC_031008
TCONS_00060234 mRNA downstream 6344 22585509 ~ 22590739 (-) False XLOC_031004
TCONS_00060233 mRNA downstream 6959 22585269 ~ 22590124 (-) False XLOC_031004
TCONS_00060231 mRNA downstream 23410 22550617 ~ 22573673 (-) False XLOC_031003
TCONS_00060230 mRNA downstream 23459 22550617 ~ 22573624 (-) False XLOC_031003
TCONS_00060238 mRNA upstream 2551 22605530 ~ 22619879 (-) False XLOC_031005
TCONS_00060239 mRNA upstream 6171 22609150 ~ 22615087 (-) False XLOC_031005
TCONS_00060240 mRNA upstream 6847 22609826 ~ 22621417 (-) True XLOC_031005
TCONS_00060241 mRNA upstream 248878 22851857 ~ 22868650 (-) True XLOC_031006
TCONS_00060242 mRNA upstream 268739 22871718 ~ 22952156 (-) False XLOC_031007
TCONS_00060226 other downstream 158488 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 159100 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 362578 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 500175 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 644949 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 619722 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 728174 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 1100478 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 1154954 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 1165398 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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