RNA id: TCONS_00060240


Basic Information

Item Value
RNA id TCONS_00060240
length 756
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_031005
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22605530 ~ 22621417 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAAGGCAAAACTGTTTATGTAGTTTGATTGTGTttaCGTGAAGTATTTTTCTAAGCAAAGGGCCATTGTGTCTGTACAACGCAGTTCTTGTTAAACCAGCCTGCTTCAGCGAACTTACAAAGTCATTCAACAATGAGCGACGAAGATGAGAGACACAGAAAGAAGATGAAAAGAAAAACCTGTACGGGTGATTCAAAGTCGCCCGCGAAgaagaaacagaaaataaaagacaaaagcgAGGAAAAGAGCCACGCAGTTCAGAAACACGacgCTATTGGTGGTAAAGCTGACTCTACAAAAACCAAAGTGAAGCTCTCTGGCAAAGACAAGGACAAAGGGAAAATAAGTAAATCTGCCCACTCAACAGAATGGACTGAGAATGATAAGAAAAGCAGCTCCGATGGTGGCAAAAAGCAAATAAAGAGAAATGAAAAAGGACAACTTCTTTTTAAAGACCACCCGGAGTTCACACCTAACATGACTCCCAAAGAGGTTTTACAGGCTGGCAGTTTTGGGGGCACCTATTTCAGGCCGATCTACTCCAGTATCACAAagaAACATTATAAAGATGTTTGGAAGGAGCTTCCCGAAGACTGGCTGGATGGACTAAACATCCCTGAGCAGGTGGCTTCATCCACATACCGGGAAAAAGTGAACACCTATAAAGTCAAATGTGGCGGCAGTTTGGAGATGTGGGAAAGCAGTGGCTGGATTGTGCCTCAGGATCCATACGGCTGGTTCCAATGGTACTGCAG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-450 No description available

Ensembl:

ensembl_id ENSDART00000138716

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061530 lncRNA downstream 99762 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00061992 lncRNA downstream 152537 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061991 lncRNA downstream 153832 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061990 lncRNA downstream 374668 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061989 lncRNA downstream 374774 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00060247 lncRNA upstream 335478 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060246 lncRNA upstream 335478 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060244 lncRNA upstream 335478 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060248 lncRNA upstream 335478 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060245 lncRNA upstream 339536 22960953 ~ 22967609 (-) True XLOC_031008
TCONS_00060237 mRNA downstream 6847 22597083 ~ 22602979 (-) True XLOC_031004
TCONS_00060236 mRNA downstream 7046 22593276 ~ 22602780 (-) False XLOC_031004
TCONS_00060235 mRNA downstream 8945 22590326 ~ 22600881 (-) False XLOC_031004
TCONS_00060234 mRNA downstream 19087 22585509 ~ 22590739 (-) False XLOC_031004
TCONS_00060233 mRNA downstream 19702 22585269 ~ 22590124 (-) False XLOC_031004
TCONS_00060241 mRNA upstream 230440 22851857 ~ 22868650 (-) True XLOC_031006
TCONS_00060242 mRNA upstream 250301 22871718 ~ 22952156 (-) False XLOC_031007
TCONS_00060243 mRNA upstream 252397 22873814 ~ 22882210 (-) True XLOC_031007
TCONS_00060249 mRNA upstream 486387 23107804 ~ 23117078 (-) False XLOC_031009
TCONS_00060250 mRNA upstream 495224 23116641 ~ 23118290 (-) True XLOC_031009
TCONS_00060226 other downstream 171231 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 171843 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 375321 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 512918 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 657692 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 601284 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 709736 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 1082040 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 1136516 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 1146960 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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