RNA id: TCONS_00060247


Basic Information

Item Value
RNA id TCONS_00060247
length 5248
lncRNA type inter_gene
GC content 0.41
exon number 4
gene id XLOC_031008
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 22956895 ~ 22974641 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGATGTATATCAAGTTATGAGCATTTTCTAGGAAAACATGCTAATATAATGAAACAAAATGTGCCTCTGTGAGTGCATGTCTATAATAGAAAAGAGCAGACAAGATTTTCTCACTTCTGCTTTGCTCAAACAGCTGAGGCCTAATCTGTGtatgtgtttgggtgtgtgtgtgtgatctataACTGCTTACTTCCTCTGTTGCTACCCAGACCAGAGACAAAAGCCCAGAGAAAACATCTCAGAACAGATAGATGAAAGGAATATCCCAAAGAGATATTGTTCTTTGGACATTACAGGGAATTACTTTCAGTCATCATATTTCTGTTTGTGCAGCCATACAAACAAGCATTCGGAAGTGCAGTCACTGCATTTGTGGATGAAGTTTCCATAACTCATTCAATTCTGgtcACTATCATGCTTGGAGAAGCTTCCctttatgttttgaactgcacaGAAGAAGCCACAAATCATGACGGATACAATCGTGCACGCTCATCTCCTTCTGTGACCTGTCCTGACGCAACAAACGCCACTGCCAGACCAGCTCTGACACCCCGAACTGTGAGAGCTGGCAGACCTGAAAGCCTGAAGAAGGCAGGACAGTGCCGCGCCTCTGCTCCCAGTAAAGCCATGCCCATTCACAGCTGTGACAGGGAGGATCGCCTAGGCATGTCAGTGTATTGTTCCTGGTGCTGTCCCAGCATCTACAAGGACTATCCGGATCTTCGGCTTGGTGGTGACCGACTGGAGCCCTGGAGTCCTCAAAACCCAGACCCAGCAGATGACGGGCCGCTGCTTCAGTCTCAGGACCTGAGCTCTCTGGAGCCCTCTCTGAAGCCAAGCCAACAGGCTGTGACCCAACAAGACGAGGAGTATCTAGTCATGGAATCCGCTCACAGCCCTGACTGGCAGAAAAGGCTGACCAACTCCATGCTGAATGGATATCTAGAGGTCCAAATGCTGGAAGTGTTCTGTCAGCACATGCAAAACATGGCGTGCTGTGGCTCATCCCTACTGGGCCCAGATGTTATGCCAACATTAGTGCCCACGGTAGCAGACAAAGAGCAGACAACCAGTCGGGCAGAGGAGCTGGATTCTTCATCCAGTAATGTTGTGCGTTACTTGAGCACTTGTTCAGCTCCAGCCACCTCTCACTTCAGCTCACCTGTGCTGCGAATCTCAGAAGCGGagtaacacacacaaaatgttctATGCTGCACGCCTGTATTTTGACCATCGCATTAATATTTCAAGTTATCTCTGTTGCCAAAGTAATGTTCTGCATTGAGTGCTGACAGCATTCGCAGCATGTTGAATAGGCATGGGCCTTGGATAAAATTATCACGGTTTTGTGATTAAaacatgttctttttaaatgtaagggtaaaaaactaaaactttttcccctttgaacacaaagtattttattttgagaaacttttttttaaagtattttggagcattaaacatgtcaggctaaataattcacatgaatcattgacttttgctgtttcAATAACACAGACTTTTTAACGATTTAAAACAGCCTCTTTAGATATGTTTTCTGCTGGAGACActgttttgcttaaaaaaacaaactaaaaagtaaataaaaaattttccacacaccttagaaacggtatagcagaaaacttTTGGCTTTTTTAAGACACTGAAATATACCTCGAGACACTTTGAAAACGGTtgtcgtcccatgcctaatgttGATTACCAGTGAAAAGTGTCGACTCATGCCAGCATGTTTTATAGAGGCtgcaattatttaatcatttgatAATCCAGTAAAAACAGCTAATCTTATAAAGCATTActtcaattaaaaaaagtaaacactTAATTGTAGTAACTTCCTACTTGAGAACTTTATTTCTAATTATCAAAttatgtatacattttaaaaacatattacaagTATTAAAGAGCCCttgttatgcattataaaagatcattttttggttttgggggtctccaacaacatgctgatatgcgTGCATGGTCAAAACATTGTCATTGTCtgatattatgcatttatttttacctgattatcccaacaactcccatatcattcattcagcaattcatttgttcccaaacccctccttggCGTGAaactaatctgcgctgattggtctgatgacccagtctgttgtgattggtcaactgcgttcagcatgagacagagagaaatgcgcGCCACAGCTATGAAGTAGCACACAGAGtatagcaggtcgcacaccagaagcgccgctcggcgccgcgacacggcgcgcacatgacagtttaaagtatcgcacaccagacgcgcacattcgaaggatatttaacatgaaactaatcagatggcgctctgtggcgcggctgaaaaatgaactgcgtcctgagccgtcgccgggcgccgcagacttgcggtgccggtgtgtgtatcctgatagaaacctatgtttagaattctaaaatacatggctctgcgtggcgctgcgccgctgagcggcgcttctggtgtgcgacctgcttatgtcagagcccaatgcaggaatgcagtAAAGTAATGCAGTTagacaccagcatattactctactctttaACCTAGCTCCAAGTaatacattcagtattaatccacacagtagcaaagttaaactattttgaaaattgaccttGGCAcgtgtgtgaggaacagctgaggGTGGCCAAagcaaaggcaaacagcagaggatctcgagttcagaaacgcatttaaaactGTAAAGGAAGACGCACGCATTGtgttttcaacgtggttttggacacaatatgtgaaATAGCCCATGAAGATTTAACCTGAGAAATACAATACAAGCACTGATCAATAATAGATACGGGATTACAAGCCGTGCGGAGCGATTACAACTgacaaaacaatattaaatacatatttagcaaactacagaaaacaattttaattacacttgcatgttatgatccggaggaagaagaaactggtccatatgaactgtagcagttactgacaaagtccctgtcaaagtctgacgaagtcccatacataatagtatctgctgctccttcctttcATAGCAAACAGCTGACGAATCCCACATTTCAGCATAGCTTAATGTACCAATCATCAGAAAGATGACAAGAACAAACAGCACTAAGTGGGCTATACTGTAGTGTTGGTGTGAAAATTTAATCCTTTTGTTCCCACAGCCAAATCTTCATCTGTCAATGATCATCATCTTCGcatcatgatcagtcccgtgatcccccgCACCtcactagtgtctgaagggaaagacgcgttcatgttttaccagaACCAGCACTACATATTAGGTGATACACTGTATTGACGTTGACGCGTTTAGGTAAAAGATCCGAATCCAACACGATTCATTTTTTCAACTGAGTCAACTATttcattaaagaatcaatagttttaaacacggtgcactttcagatttaaatttcagctggatgttttcatggaagctcattttcaaaaacccataataggggctctttaattgtTTCGGAAGCAAGTTAAATCTTTAAACTTGATCTTTATCTAGAAACACACAAGCAATGTGAAATTTGTCTGTGAAGAAGCCTTGTGTAAAACCAGGACACCCACAGAAATTATGTTAGTAATGTATTACCAGCagacatccattcatccatccagccACCTGTAAAAATAGTCCTGCCTCAAAAGGAACGTTTTGGCAATGTTACGGATCAAATAATTAATGCTTGTTTGAATAATTCATATAAATCATGAACCTCACATTTCTATTGTTAGACCTTACAAACTGCTGGCACTTCAGTTTCATTGTAAATACTAAgctgtttgttgtgtttttgtcactTTTCTTGTTAAAGAAAGGACTTTTAATGAAGCTTAAATTTTGTTGGCCATTTTAATAAtagttatagaaaaataataattacaaaaataacgTATGCTATTTCTTTAAATGTATCCTTTCCGAATGAAATATCTTGACAAATGTGAtcacatgcaaactcagaaaccaGTCCAGAGTTATGACAGAgctctttctcctccttttccccCTTTAATCTTCCATCTTTTACCTCTGCTGCTCTTCCACTGCAAGCTTCCATCAACATTAATAGTACAAGGCACATTCAGAAGAAGAGGAACCAAAGTCATGCAACTGTGTGTGTAATGGCATTTATAAATGCTACCACTTCCTTCTAAACAGCCAATCAAATGTTGTTTATCTCCTTCAGTGCTGCTAGTAAATGCTACTTTCACTTTCCTTGAAATCCTAGTGAAGTGTTTAAGAATAATCTGAAAACATATTAGCTTATGTTCTTGGTTCTTTATATGGTGCCATGATTTATAATCATTCAGATGTATGTTTGTGATTTGAAAGATATGTTTAGTGATTGAATGCTATTAAATACTGCCACCTGCCGGTCATATTGTGAAGGGACAGAGAACAGAAGGCGCGCGTCCTCTGCTGGAGGCTTTGGAAACAGCGGCCAGTGTCACGATATGAAAGGTTATGTCATAATGTCCACGGCATTGTCCTTCAGTCAGAGCTGAGACGTCGATGATTAGCCATTACATCGATGTTTACAGCTAAAATAAACGATttacattaattataatatattaagcaTTGCGTTTTATTGTAgtggtgaagaaaaaaacaacttaaatgcCTTCACTGCCATGAATGTGCTGACATACTGTTTGACGTCATTCTGACGTCACATCAAGGGGAGTGCCGACGTGACAGTTAATGGACCATGagtaataaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctgatatCCTGGCACCGACACACAGGAGCTAAATTCCCAGCATCACCAACAGGATTAACTGTTAACTGTGATCTGTAAATgtgttagtatgtgtgtgtgtgcgtgctaaTCCTATCTGTGCCAACATGGCTACTTCACACTCTTGTAGCCGCTCTGTGTGCATCTAAACGGGCTCTTTAGCCTGGCACCATGTGGCAAACCATAATACCAGATGGACtgctctctctccttctctctctccacTAGTTCTGGACACTGCCCAGGCCAGAAGAACATTTACTGTAGTTCCTTGCCATATATTTGATGCCCTGTGGGTAGTGGGACAGTAATGTAAATTTTTGGATGGGTTAATGAAGCATAATGATGAATACGTTTTAAATAAATTCAGATGTTTTGAG

Function

GO:

id name namespace
GO:0043226 organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061530 lncRNA downstream 446831 22506445 ~ 22510064 (-) True XLOC_031001
TCONS_00061992 lncRNA downstream 499606 22455566 ~ 22457289 (-) True XLOC_030999
TCONS_00061991 lncRNA downstream 500901 22453830 ~ 22455994 (-) True XLOC_030998
TCONS_00061990 lncRNA downstream 721737 22232159 ~ 22235158 (-) False XLOC_030995
TCONS_00061989 lncRNA downstream 721843 22230690 ~ 22235052 (-) False XLOC_030995
TCONS_00061531 lncRNA upstream 143795 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060261 lncRNA upstream 384328 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061993 lncRNA upstream 477002 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060291 lncRNA upstream 819947 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061994 lncRNA upstream 1107383 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00060242 mRNA downstream 4739 22871718 ~ 22952156 (-) False XLOC_031007
TCONS_00060243 mRNA downstream 74685 22873814 ~ 22882210 (-) True XLOC_031007
TCONS_00060241 mRNA downstream 88245 22851857 ~ 22868650 (-) True XLOC_031006
TCONS_00060240 mRNA downstream 335478 22609826 ~ 22621417 (-) True XLOC_031005
TCONS_00060238 mRNA downstream 337016 22605530 ~ 22619879 (-) False XLOC_031005
TCONS_00060249 mRNA upstream 138562 23107804 ~ 23117078 (-) False XLOC_031009
TCONS_00060250 mRNA upstream 147399 23116641 ~ 23118290 (-) True XLOC_031009
TCONS_00060251 mRNA upstream 207251 23176493 ~ 23179319 (-) False XLOC_031010
TCONS_00060252 mRNA upstream 207702 23176944 ~ 23179335 (-) True XLOC_031010
TCONS_00060253 mRNA upstream 226825 23196067 ~ 23200880 (-) True XLOC_031011
TCONS_00060226 other downstream 518300 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 518912 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 722390 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 859987 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 1004761 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 253459 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 361911 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 734215 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 788691 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 799135 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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