RNA id: TCONS_00061531


Basic Information

Item Value
RNA id TCONS_00061531
length 548
lncRNA type sense_over
GC content 0.37
exon number 2
gene id XLOC_031009
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23107804 ~ 23118290 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTTTGCAATATCCTGATAATATCATATATTGTGAACAAGAAAGCTTGATTTATTGTCAAATATATTGTAACAGTTTGTGACTTTTCCCATTTCTCTGTCTCAGAACTACCAGTAGAGGTGATTTTGTGTTCTGTGCTGACAGATTGGTAAGCATTGTGTGTAAATATCATATTTGTGGTTTATAAGCAGCTATTGTCCTTGTAAATAAAAGCAGCCCACACGAGTAATTTTGCAATCAACACAGAGAATGTATGGTTGATTGCATTTCACATTCACCGTAGTACTGAAGAAtcaacttgattgttttttttgtatcGCAAAATTAGTATTGACTcatgttttgtatttgtttgctCCCCCTTCCTCCCCTCAATCTGCatcttgattgtttgtttgtttgtttgtttgttctgctACCAGATCAGATTAGTTGTGGAAGAAGGCCTCAATCAGCTTCCATACAGTGAATGTACTGTAACCACGCCAACAGGACATAAATATGAGGGTGTGAAGTTCGAGAAGGGGAACTGTGGGGTCAGCATCATG

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060248 lncRNA downstream 138396 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060244 lncRNA downstream 143289 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060246 lncRNA downstream 143613 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060247 lncRNA downstream 143795 22956895 ~ 22969242 (-) False XLOC_031008
TCONS_00060245 lncRNA downstream 145428 22960953 ~ 22967609 (-) True XLOC_031008
TCONS_00060261 lncRNA upstream 239871 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061993 lncRNA upstream 332545 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060291 lncRNA upstream 675490 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061994 lncRNA upstream 962926 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 962926 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00060242 mRNA downstream 160881 22871718 ~ 22952156 (-) False XLOC_031007
TCONS_00060243 mRNA downstream 230827 22873814 ~ 22882210 (-) True XLOC_031007
TCONS_00060241 mRNA downstream 244387 22851857 ~ 22868650 (-) True XLOC_031006
TCONS_00060240 mRNA downstream 491620 22609826 ~ 22621417 (-) True XLOC_031005
TCONS_00060238 mRNA downstream 493158 22605530 ~ 22619879 (-) False XLOC_031005
TCONS_00060250 mRNA upstream 2942 23116641 ~ 23118290 (-) True XLOC_031009
TCONS_00060251 mRNA upstream 62794 23176493 ~ 23179319 (-) False XLOC_031010
TCONS_00060252 mRNA upstream 63245 23176944 ~ 23179335 (-) True XLOC_031010
TCONS_00060253 mRNA upstream 82368 23196067 ~ 23200880 (-) True XLOC_031011
TCONS_00060255 mRNA upstream 154422 23268121 ~ 23277385 (-) False XLOC_031013
TCONS_00060226 other downstream 674442 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 675054 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 878532 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 1016129 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060212 other downstream 1160903 21943382 ~ 21952134 (-) False XLOC_030988
TCONS_00060254 other upstream 109002 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060260 other upstream 217454 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 589758 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 644234 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 654678 23768377 ~ 23770557 (-) True XLOC_031030

Expression Profile

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