RNA id: TCONS_00060258


Basic Information

Item Value
RNA id TCONS_00060258
length 1615
RNA type mRNA
GC content 0.45
exon number 7
gene id XLOC_031013
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23268121 ~ 23280098 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGATTAAACTACACAGCACATCAGAGAGACTGAGCGCGatacgcacacacatactcacatgGGTTGCTATGACTGCTGCATCCGCTGCCTGGGCGCTGTGCCCTACACCAGCTTGGTGGCCACCCTGCTCTGCTACGCCGGCGTGGGGCTCTTCTGCGGGGCTGGCCATGAGgcactcactcatacacacaccTTTGTAGAGCTCCACTTCGCAAGGGACGTCCAGGACTTCACTGTCATGGCAGACTTTATAAAGTATTTCCAGTATGTGATCTACGGTCTGGCCTCCTTCTTCTTCCTCTATGGACTGCTGCTGCTGGCTGAAGGTTTTTACACCACCAGTGCAGTAAAGCAGACGTTCGGGGAGTTCAGGAGCACACAGTTCGGGCGCTGCATAAGTCTCACTTTTATAATCCTGACGTACGTGCTCGCTCTGATCTGGCTGATTGTGTTCGGCTTCACGGCTGTTCCTGTGCTCTTCTTCATTAATATGAAAAGCTCCTGTCACACTGTTAACGTCCTGTCAGAGACCACCTTGTTCAACCAGCAATCCAGGGTCTGCATGGATGCACGCATGTATGGATTTCTTTCCTGGAATGCCATGCCAGGGGTTGTTTGTGGAAATGCACTGGCCAACATATGCAAAGCACCAGAGTTCCACGTGACCTATGACCTTTACATCTGTGCTTTCGCTGGAGCAGGAATCACCCTTCTTGCCCTGTTCGTTTACATGGTCGCCACCACCTACAACTACGCTATTCTGCGGTTTCTAGGAAGGAAGGGAATCCGTTGCTAGGTTCAGTTTCTACGCCTGCTTTCCTGCTGCTGCGGTTTCAGTGTCTTCACTGCGGCCGGTGAGGAAACGCAAACGAGCTCCATGAAGCCCCTGCAGAGTTCTAGCTTACagagaacaaacacacacaaaccactGTATTCACAAACCAAAGGACCACaaactgaacacacacaaaaacactgatCAATAGATGCAAATAAATTTGTTAAAGCACAACACATAAAAGACTGTAGCGTAGATCTCTGGCGGAGTGGAATCTTGCTTCTGTATTTCTTCACTCGTTTCCTCTCGCTGTGTCTTTATTAGACCGCTCTCATggccatttattcattttaatgattGTATTCATTGTGCTTCTTGGTCATATTAATGCCTTGCAGTTTGCCAGGATTTTAGCTTTTCTCCACTCTCTTTCTTTTTtagacacacccacacacactacaCGTCTTTTTGAGAGAGTGTGATTGTTGTCAGATGTAGGTTTGCATTGTGTGAGACACAGAGAACTCATTATTTACAGACACTAATGTTGGTCCTCCTGTGTGTGATTGTAAGTTTGTGAGtggttttgttgtatattttgaCTAACTTTAGCAGTATGCTGAACCTGATCAATGATGGTGCTCGGTCAAAACAActaatcattttttattgttcTGACTCGTTTTAGACAACTAAAAGTTATTTCTAGAGTACTCTTGTGAATAACTGTATGTGATTAATACGAATGTAGAATTGAAACTAAAGTGAGTTTACATAAAATCTGTGTTGACTTCTTTGCAACTCATGCAATAaactttaatttcttttaatgAA

Function

GO:

id name namespace
GO:0061564 axon development biological_process
GO:0022010 central nervous system myelination biological_process
GO:0031175 neuron projection development biological_process
GO:0005886 plasma membrane cellular_component
GO:0043209 myelin sheath cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0019911 structural constituent of myelin sheath molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030710-6 Predicted to be a structural constituent of myelin sheath. Predicted to be involved in axon development and central nervous system myelination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in myelin sheath and plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in Pelizaeus-Merzbacher disease and hereditary spastic paraplegia 2. Orthologous to human PLP1 (proteolipid protein 1).

Ensembl:

ensembl_id ENSDART00000126540

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061531 lncRNA downstream 154422 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060248 lncRNA downstream 293480 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060244 lncRNA downstream 298373 22956895 ~ 22969748 (-) False XLOC_031008
TCONS_00060246 lncRNA downstream 298697 22956895 ~ 22969424 (-) False XLOC_031008
TCONS_00060261 lncRNA upstream 73472 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061993 lncRNA upstream 166146 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060291 lncRNA upstream 509091 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061994 lncRNA upstream 796527 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 796527 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00060253 mRNA downstream 67241 23196067 ~ 23200880 (-) True XLOC_031011
TCONS_00060252 mRNA downstream 88786 23176944 ~ 23179335 (-) True XLOC_031010
TCONS_00060251 mRNA downstream 88802 23176493 ~ 23179319 (-) False XLOC_031010
TCONS_00060250 mRNA downstream 149831 23116641 ~ 23118290 (-) True XLOC_031009
TCONS_00060249 mRNA downstream 151043 23107804 ~ 23117078 (-) False XLOC_031009
TCONS_00060259 mRNA upstream 3792 23283890 ~ 23317477 (-) True XLOC_031014
TCONS_00060262 mRNA upstream 73547 23353645 ~ 23362602 (-) False XLOC_031016
TCONS_00060263 mRNA upstream 76711 23356809 ~ 23429228 (-) True XLOC_031016
TCONS_00060264 mRNA upstream 177014 23457112 ~ 23464970 (-) False XLOC_031018
TCONS_00060265 mRNA upstream 177123 23457221 ~ 23485161 (-) False XLOC_031018
TCONS_00060254 other downstream 45302 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060226 other downstream 829526 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 830138 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060223 other downstream 1033616 22234407 ~ 22234505 (-) True XLOC_030995
TCONS_00060221 other downstream 1171213 22087656 ~ 22096908 (-) True XLOC_030993
TCONS_00060260 other upstream 51055 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060280 other upstream 423359 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060284 other upstream 477835 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060285 other upstream 488279 23768377 ~ 23770557 (-) True XLOC_031030
TCONS_00060289 other upstream 509091 23789189 ~ 23795690 (-) False XLOC_031032

Expression Profile

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