RNA id: TCONS_00060284


Basic Information

Item Value
RNA id TCONS_00060284
length 655
RNA type unprocessed_pseudogene
GC content 0.44
exon number 1
gene id XLOC_031029
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23757933 ~ 23758587 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggAGTCTGCAGAGCAACATTTTTTGTTGGGTTTCGTGTGCACTATTATGTCTTCACCGATCATCCAGAGCAGGTTCCTGATGTGAAACTGGGTGGAGAACGTAAACTGACGGTGATGACAGTCAATAGTTCGAGCAGATGGCAGGAGATGAGTTTGGGCAGGATGAAAAGGCTGGAGATGCTGATTGAGAGTGGACTGGTCAATGATGCTGACTATCTTTTCAGTCTTGATGTGGATACAAAGTTCTACGGCCGCTGGGGAGCAGAGTCTTTGGGTGATCTTATAGGTGTGATACATGCATGGTATTATTATACACCTCGTGAGCAATTCCCATATGAGAGAAGGCCTGAGTCTCAAGCGTTTGTCCCTTTTTCTGAGGATAATTATTATTAGGGTGGAGCTGTGCTTGGTGGTTCAGTGAAGCAAGTATATCAGCTTGCTAAAACCTGTCGAGAGCAGCTGGACATTGATGCAGCTAAATCCATTGAGACAGCATGGCAGGAGGAGTCCCATTTGAACAAGTACTTCCTTTATAACAAACCCAGTAAACTGCTTTCACCTGAATATTCTTGGGATAAAACAAAGACTAAACAAGACCAGATCAAAGTCATTCGCTACTCTCATATTCCTAAAAACTATGCTGAAGTTCGTCCA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135315

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061993 lncRNA downstream 301699 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060261 lncRNA downstream 400531 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061531 lncRNA downstream 644234 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060248 lncRNA downstream 783292 22956895 ~ 22974641 (-) False XLOC_031008
TCONS_00060291 lncRNA upstream 30602 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061994 lncRNA upstream 318038 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 318038 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00061996 lncRNA upstream 318038 24076625 ~ 24086136 (-) True XLOC_031041
TCONS_00060318 lncRNA upstream 482454 24241041 ~ 24244557 (-) True XLOC_031050
TCONS_00060283 mRNA downstream 8585 23738167 ~ 23749348 (-) True XLOC_031028
TCONS_00060282 mRNA downstream 28343 23721515 ~ 23729590 (-) True XLOC_031027
TCONS_00060281 mRNA downstream 32453 23721515 ~ 23725480 (-) False XLOC_031027
TCONS_00060279 mRNA downstream 42072 23702295 ~ 23715861 (-) False XLOC_031026
TCONS_00060278 mRNA downstream 42906 23702295 ~ 23715027 (-) False XLOC_031026
TCONS_00060286 mRNA upstream 18093 23776680 ~ 23783739 (-) True XLOC_031031
TCONS_00060287 mRNA upstream 30005 23788592 ~ 23795688 (-) False XLOC_031032
TCONS_00060288 mRNA upstream 30005 23788592 ~ 23800376 (-) False XLOC_031032
TCONS_00060290 mRNA upstream 30696 23789283 ~ 23805387 (-) True XLOC_031032
TCONS_00060292 mRNA upstream 81183 23839770 ~ 23840920 (-) False XLOC_031033
TCONS_00060280 other downstream 42934 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060260 other downstream 416310 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060254 other downstream 535114 23222701 ~ 23222819 (-) True XLOC_031012
TCONS_00060226 other downstream 1319338 22437311 ~ 22438595 (-) True XLOC_030997
TCONS_00060225 other downstream 1319950 22435786 ~ 22437983 (-) False XLOC_030997
TCONS_00060285 other upstream 9790 23768377 ~ 23770557 (-) True XLOC_031030
TCONS_00060289 other upstream 30602 23789189 ~ 23795690 (-) False XLOC_031032
TCONS_00060312 other upstream 441346 24199933 ~ 24201432 (-) True XLOC_031046
TCONS_00060314 other upstream 454590 24213177 ~ 24218717 (-) True XLOC_031047
TCONS_00060319 other upstream 493872 24252459 ~ 24259292 (-) True XLOC_031051

Expression Profile

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