RNA id: TCONS_00060299


Basic Information

Item Value
RNA id TCONS_00060299
length 2443
RNA type mRNA
GC content 0.51
exon number 16
gene id XLOC_031037
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 23957572 ~ 24000211 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCTCTCTACCGGACGACTGGTAAAGAACACCCCTACCACCGGGCGAGACTAACTTGACGTTACTTTCCTCTCATAATCGATTCAACTCCTCAAACCTAGCAATCTGCGATAGCGGCAGAGAGCGCGTTGTGCTGAAGCTGTGGAAAGCGGATCGGGTCCCAGCAGCGCAGCGGCAGTCCAGGAGGAGCTGGCTATGCTGTTTCTCTTGGCTTGAATTTTTTTGGGGGTAGCGGTTTCGCTGCGGCTCTCTCTGTGACATTGCGGTTGGAAGAGCTGGAGGTTTCGGTTCGAAGATGGCGGAGAACCCCGTCAACACTTCAACGACAGCTACTAACGCAATGACCTCACCTTTAACTCCTGAAAAGAGGCCTCAGAGTAATGGTCACGCCTCACCAACTTACCAGAAAAACAATCAAGGCAGCCCTTCAGTAAAACCGACGGATGCCCTGACTCCACCCACTGTCACAGAAAAGAAAACTCAGACCAATGGACATGCATCACCATCACGCCATCCAGCCAACGCACAAGCAGGTAAACAATATTTGGAAGGATATTTGAAGACAGATGACAGGATGAGACTTGCCAAAGAGAGACGTGAGGAAAGGGAGAAAAGTTTGGCCGCAAGGGAGCAAGCTATAAAGGAGAAGGAGAGACGGGCACAACTGCAGTATGAGAAGACTGTTGAAGAGCGATGGAAGCGCCTGGAGGAGCAGAGGCAGAAGGAGGAGCTTCGCAGAGCAGCCGTGGAGGAGAAGAGGAGACAGCAGCTGGAGGAGGAGAAGGAGCGTCTGGAGGCTCTAATGAGGAGATCACTGGAGCGGAGCCTGCAGTTGGAGAACAGGAATAAACGCTGGGTTTGGGGTCCCAACGGTCCCACTCAAGGTGAATGGGAGAATGCCCCGCCTCCTCTCCTCCCCCATGACCTCGCTGCCCCCTCGCCTGCTGCCATCGAATCAGGCAACGTGCCCTCCAGTCCTCACAGGTCACCATATCGAGGGTCACCGAGCCGCCGCAGAAATAATCCTGTCCAGGCAGAAGAGTCCAGTGGAGCTGTCAGTGCCCCCAACACCCCCAAGAAGGAGAGACTGCGCAGAGAGAGGAGGACTGGCTCACCGGCCACAGGTTCACCAATCAGACGAGCCAAATCTCCTGCTGATGTCACTCGCCGCTCTGCTTCACCTGCAACACCCAAAACCGCCATCAGTGAGAACAGCAAGAATACAGAAGACAAACAAGCTGAGGATGTAAAGGAGAGCAAGTTTGTCAAGGCTGAGATCCATCAGAACAAGAGTATTAACAGTGAAAACTTGGACAAGGCTGCAAAAATACAGCCACCTATTTTCAGCACACCACCTACAGAAAGAAGAACAGTTAAGATAGAATGTAACGGGACTAATGGAGCAAAAGACAAAACAAGTGTAGCTTTGGAAAACCAACAGAAAAAGAACGACAAGACTGAGACCCCAGagaaaaaacataaatcaaactGTGCCGATGTGACTGCAAACAAGAGTGCAGACGCTTCACCTGTAAACTCTGCTGGCAAAGTGATTGCAGGAACGACAGATGCTGAGGAGGCGTCTCGTCTGCTAGCTGAACGCAGACGTTTGGCCAGACTCCTGAAGGAACAGCAGGAGAAACAGCGCAAAGATCTGGAGGAGCAGGAGAAACTGAAGAGTGAGCAGCTGAAGAAGAGGCAGCTGGAGGAAAGAGCTCGACAGGAAGAGAGAATTCGTCAGGCAGAGCAGGAAAAATGCAGGCTCGagcagcagcagaagaagagAGAGCAGGAGGAGAAAAAACTGAAAGAGAAGGAGCTCCAGGCCCACATGGAGAAAGAGAAAGAGGAGGCTGAGAGTCGTGCTCAGAAAAATGCTGAGCGTCAGCAGCAGGAGAGAGAGCTTTCCAAGCAGCAGGAGGAACAGGAGAGACAACAACGAAAAAAGAGAATTGAGGAAATAATGAAGAGAACCAGGAAGAGTGACGGCGAGATGAAGGAGATTGCAGGAAAAAGAGCAGAGACTGGCTGTTCAAATGAACAAGTAAAGTCACCTTCTCACATACCCATAAAAAAACCCTCCCCAAATGGCCAAATGAACACAAGCGCAACTGCGGCGAAAACAGAAGAGAAAGGAAAGGTAAGTGAAGAAAGCGCCAAGACTATCAGACAAGACACTGAACATTTCAGGACGCAAAAGGAGTTGATCTCCATCCCTGAATTCTCCCCGGTGAACTCACCCCAGCAGAATGGCACGAGTAACATGCGCGCTCTTGAGGACCTTCTGGATCTGACGGGGCAAGTAGCTTATCCCAGACTCTCTCCTGCTGCCAGCCTGGGCGACTGCAACAAAAACCTCATTGAAGGGGTCTGTAGTCCTGGATCCGACTCTAAACTCCTCTCCTCCAATTCTCCAGCCTCTGACAAACACCATGTACAATAA

Function

GO:

id name namespace
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0015630 microtubule cytoskeleton cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-150 Predicted to be involved in microtubule cytoskeleton organization. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAP7D2 (MAP7 domain containing 2).

Ensembl:

ensembl_id ENSDART00000085969

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060291 lncRNA downstream 155834 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061993 lncRNA downstream 504929 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060261 lncRNA downstream 603761 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061531 lncRNA downstream 847464 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060245 lncRNA downstream 993554 22960953 ~ 22967609 (-) True XLOC_031008
TCONS_00061994 lncRNA upstream 76848 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00061995 lncRNA upstream 76848 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00061996 lncRNA upstream 76848 24076625 ~ 24086136 (-) True XLOC_031041
TCONS_00060318 lncRNA upstream 241264 24241041 ~ 24244557 (-) True XLOC_031050
TCONS_00061997 lncRNA upstream 262454 24262231 ~ 24267113 (-) True XLOC_031052
TCONS_00060297 mRNA downstream 51229 23888314 ~ 23909934 (-) True XLOC_031036
TCONS_00060296 mRNA downstream 82354 23874836 ~ 23878809 (-) True XLOC_031035
TCONS_00060295 mRNA downstream 85078 23874796 ~ 23876085 (-) False XLOC_031035
TCONS_00060294 mRNA downstream 105716 23849647 ~ 23855447 (-) True XLOC_031034
TCONS_00060293 mRNA downstream 117527 23839787 ~ 23843636 (-) True XLOC_031033
TCONS_00060300 mRNA upstream 2821 24002598 ~ 24008997 (-) True XLOC_031038
TCONS_00060301 mRNA upstream 9891 24009668 ~ 24029228 (-) True XLOC_031039
TCONS_00060302 mRNA upstream 31537 24031314 ~ 24044724 (-) False XLOC_031040
TCONS_00060303 mRNA upstream 32581 24032358 ~ 24044877 (-) True XLOC_031040
TCONS_00060304 mRNA upstream 102722 24102499 ~ 24112175 (-) True XLOC_031042
TCONS_00060289 other downstream 165473 23789189 ~ 23795690 (-) False XLOC_031032
TCONS_00060285 other downstream 190606 23768377 ~ 23770557 (-) True XLOC_031030
TCONS_00060284 other downstream 202576 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060280 other downstream 246164 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060260 other downstream 619540 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060312 other upstream 200156 24199933 ~ 24201432 (-) True XLOC_031046
TCONS_00060314 other upstream 213400 24213177 ~ 24218717 (-) True XLOC_031047
TCONS_00060319 other upstream 252682 24252459 ~ 24259292 (-) True XLOC_031051
TCONS_00060324 other upstream 490098 24489875 ~ 24489974 (-) True XLOC_031056
TCONS_00060328 other upstream 534681 24534458 ~ 24535877 (-) True XLOC_031058

Expression Profile

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