RNA id: TCONS_00061995


Basic Information

Item Value
RNA id TCONS_00061995
length 4478
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_031041
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24076625 ~ 24086136 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGGATCTATTAAACGAGGAAGTTGTTTGTCCAGTGAACTTTCTGCATCCAGGTCGCGTAGACGATTTAAATCTGCAgcgtttttatatattatattgaacAATAGCACTTGTTGACCTTGCGTTTCGCAGAAATAGTAATATTGAAACAAAGAAAGGATCTGTAATGGTAGATAAACAGAGGGATGCGAGGCAGATGTGTCCTTGCTGTGATTTAAGAAATCACATGGAAGGCGTCAAATtgcaatctacagaacaaactgaaAGTCGGTTATTAGTGGTTTACTGgatattataaaataatgagCTCCAAAGGCTTATTAAAATTACTGTGCTTTACATAGATtacagccacacaatgtctgtgATTGGTCCGTCCGTAAAATCATTAGTGAAACCACTGACTGACTAGTTGTGTCCCCACATCATGGGAGAGGAAGACTGTCATGAGCACTTCATCACTCAGACTGAAAGTTTATGAATGCACAGAAATCAAATGGCACCGCTGGTGTGCAGAAACTCATAGAAACGATTTGCCATGATAAGTGCTTCTCATCCAGTGTATGACCCCATCTGAATCTTTAAAATCTCTGCAAGTGATCGTACATGTGTGGatacatctgtaccagctctTCTTCTCCACCACCCAGTGTGGGTAGTGGTGTTGTTTTGGATGTTGTTCTCCTGTTTGACCACATGGAATGAGAACCTAATCAGGTGGAAGAAATCGCATATTGAAGAAGGCTGATGTCCAGAACACACACATCCATTATGATTATAATTGCCATGAACCGGAGGTAGCTCATAAGTGTTTAGGAGGCAAAACAAACTCCCCCAGAAAGTTTATTTTGATGAGCTGTTTCAAACTACCAAAATGGACTGTAAATGAACTTTGCTATGGATGATTTTAGTTAAAAATTACATCAGTTTAGTTCATGCTTCAATTTCATTTGAAGTACTTAATAGGCTTGAATAGACCAAACACTGACATTTTTCACATGCTAATCAGGCCTATTACATGCTAAGGTATTGATAGAATATTCTATGATTCTTTATAGGGTTACTGTACATTAAAGCTTGTGCTGGATCATTTAATAATGAACGAAACCAGGATCCTCTCTTCACTATATTTCTTAGCTAGAGTTTGGTTTAGGACCATTTTGTATGATCTTTCAAGGAATAATTAGATTCTTACTTTACCACAAGGTAGCTTGATGGGTTCTGTGCATGAAGTCAATGTCTACTTCAGgaagaatattaataaaaatacacttttattattaaaataaatctattgaaaaggatgaataaaaacaaatacaagataaaaaaacgaaaatcctTTACTTTATTCTCTGTTGAAAATAAAGGACCTAAGACTTAGAAAGAATGTACAGAAGTCTTGATTTAATAAAACTAAGGAGATGATAATTAGCAGAAATAAACTAGTCCTTAGTCAAGGGTTGAAACCTCTGGTCTTTGAAGGACATGAAATAGAGACAGTtggctgttttaaatatttagggaCATTTATTAATAGTGGATTAACATTTGCTGCAAGTGcagagtgcatttttaaaaaagcaatgcagagaTTATATCTAAGGAGGTTTAAACAATTTGGTGTAAGTCAAGATGTTCTGGAGATGGTATACAAGAACTAGGTTGAAAGTGATGTGAGTTTTAACTGGACAGCATGGTATGGACTGTTGCCAATTAAGGAAAAGCAAAAACTGTGTCGAGTAGTAAAAATTACCAGTGAAATTGTAGATAAAGCACAAAGACAACCAAATGAAATGTATTCAAtgagaattaaacagaaagcacatgTCATAATTAAAGATTGTTCCCATCCCTTAAATCGAAAATTTCAGCTCTTGCCATCAAAAAGACGTTTTCGGCAACCTCAAGTAAAAGAAAAATGTGTCCTTTCTGCCAAATGCCATAAGAATTTTAAATACTGGGTTCTTAGTATGTATAGGGTTTAATTGAGTTTTTTAATGTGATATATGTGATGACATGTATTTTTGTTGCctgtttttttctgtgatgtgtgtaatgtgaacgctgatgtggttgtgtggtgaagccaaagataaatttcAATAAAGAAAGCAtaacaataaagaaagtaaaagcTGCTGGTTTGTATGTTTCAGCCATTAATACAGTATTCAAGCCTTTGAATACAGGTGTGCCTTTAATGTTTTAAGCTATCAATGTTTTATATGTACTTGagtctatattttaaaaaagtcaatACACAGAATAAATCCCTTTATATTCTGAGTAAAGACAGCAAAGCAATAATCAATGTTTGATATACTTGAATAGATCTCAAAAGTTTGATATACCTGATGTCTTAaaagggtgacatggtggctcagtggttagcactgttgcctcacagcaagaaggttagaaactaaattggccatagtgtgtgaatggatgtttcccagtactgagtgtcattcgctgtgtaaaacatatgctggataagttggcggttcattccgctgtgacgacccctgatgaataaagggactaagctgaaggattgAATTATATCTTAAAAGTGCTAATACAGAGAAGAAATCCATTTTTGTTCATTAGAGCTAAGTAATTACTCTTTAGGGTTATACTGTACACTTGAACAAAAAAcataacaaagcatttattctaTTACATCTGCATTCGGGCAGTCTTTCAGGGGTCTTGTCCTTCAAGGCCATAGCTCATAGTTAGCAAAGTATGTCTTCCTCTGAAGACAACGCTTTTAGGCTTTCGGTTGGTTAGAAATGTCACCTGGACCATTTCTTTCTTTATTGTCAGCAGAAAACTGACCCACTTCAGTACGTCATTCTTGACCTCTTTGAACTCTGTCAAAAGCATCTCATATAGCGGTTTTCCATCCGAATATGTAAGTAAAGTTTTGTGCTTTTTGCAATTAATGTGATTAAACCATCCAGACACTACAAACTCCAATATTAACATAGTAAATCTGGATTTgtctcactgttgattttaatccattaactaacactcactAATGAGACTTGATTATTGATAAAGTGTTACATATTGTACTTTAAAATCATTttgcaatttcattcattcattcattcatttaccctAAATGTGTATATAGAATAAAGCAGTACACTAAGTATTTTTGGTCATTAAACCAGTTAAGTAACTTTTTTCAGCTTAGGTCAATATTGTGATAATTGCATCAGCAattaaatgatcattttatttGCCATCAGACTTGTTTAAAATGATCGAGTTTAAAATGACAGAGATGCCTTTCAAATTATTCTTATGAATACAGATGGCTAAATGCTGCataggaaaaagaaaataaagggcAGCCTTCTTGACAATTGCCTCTATCATATCATTGTTAAACCTACGAGTAGCACCATGTAGTAATTTCACTGAAGCATTGGCATTACTGTACAAAGTTTGAATtgcatcattaaaatattaagacCAAAAGTACTGCAGGATTTCAGAACAAAATGAAACTCACTGAAATCAAGAAAAGTCAAAAACTGTGATGTGGATTCAGCTCTTGAGTAATGCAAAACAAGAACAAGACATCCCAAGCTGGACAGTGATTTCCGCGACGTAGATAAAGGAGCGGAGGGGGTTGCGCGATGTCTTGCTTTGATGTAATGTACACATGCATCAGCCGCTGAATGGCTgtcctgttttcaaaataagagtcccacatacagtATGTAGAAAATATAGCAAgctgttttaaaatgaatttaaaacagtttttaaaaatattgtttttatctaAACAAAGAAGAGTGGCCAATCAAAACCTGCTAGGATGTACATATTAATGATCCcaaatgttattttacagtgtgttatGTTCTGATTAACCTATTTTTCTGTGATGTATGTTTAAACAAGATTTATCTATGGAGGTACACGGTatgacattttacatttaaagaacTCACCTTCCTCATTCTAATGCTCAGATTGAACTTCAGCAAATTATCTGGACAATATTTATGCCTAAATGCTCTGATTTGTGGTCATGCAATTGTCagattataaaattacaaaaccgAGCCTCAAAAACCATCAAGGATAATTCTGGTAACATATTCACATTGCTGCAATTTTGGGAAGTGCTTCCATACAGTCCGATGAGATTTTCTCACCCCAGGCCACTAAACTCTTAACATCTCCAACATATACAGGATTTCATTAACTTTTAGCTAACCCCACCCAATACTTGGCAATATCATGACACAGcacttttttgcattttgttgttCGATGAGTTATTTTCAAATTCTTATTTAACTTGCATATCTCAGCAGATTCAGCACCTGTACATCCTGCTTTAATGtattataatttgtaaaaacttTACAATCTTCATTTAACAAAActgtctttattttaatattatttttgtctATGGTTTATAAATATTGCACGATCTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060291 lncRNA downstream 271296 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061993 lncRNA downstream 620391 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060261 lncRNA downstream 719223 23353570 ~ 23357402 (-) False XLOC_031016
TCONS_00061531 lncRNA downstream 962926 23113037 ~ 23113699 (-) False XLOC_031009
TCONS_00060245 lncRNA downstream 1109016 22960953 ~ 22967609 (-) True XLOC_031008
TCONS_00060318 lncRNA upstream 154990 24241041 ~ 24244557 (-) True XLOC_031050
TCONS_00061997 lncRNA upstream 176180 24262231 ~ 24267113 (-) True XLOC_031052
TCONS_00060322 lncRNA upstream 204592 24290643 ~ 24292159 (-) False XLOC_031053
TCONS_00060321 lncRNA upstream 204592 24290643 ~ 24292159 (-) True XLOC_031053
TCONS_00061998 lncRNA upstream 321302 24407353 ~ 24414457 (-) True XLOC_031055
TCONS_00060303 mRNA downstream 31748 24032358 ~ 24044877 (-) True XLOC_031040
TCONS_00060302 mRNA downstream 31901 24031314 ~ 24044724 (-) False XLOC_031040
TCONS_00060301 mRNA downstream 47397 24009668 ~ 24029228 (-) True XLOC_031039
TCONS_00060300 mRNA downstream 67628 24002598 ~ 24008997 (-) True XLOC_031038
TCONS_00060299 mRNA downstream 76848 23961163 ~ 23999777 (-) True XLOC_031037
TCONS_00060304 mRNA upstream 16448 24102499 ~ 24112175 (-) True XLOC_031042
TCONS_00060305 mRNA upstream 30377 24116428 ~ 24127432 (-) False XLOC_031043
TCONS_00060306 mRNA upstream 30746 24116797 ~ 24127310 (-) False XLOC_031043
TCONS_00060307 mRNA upstream 30827 24116878 ~ 24124118 (-) True XLOC_031043
TCONS_00060308 mRNA upstream 52395 24138446 ~ 24154064 (-) False XLOC_031044
TCONS_00060289 other downstream 280935 23789189 ~ 23795690 (-) False XLOC_031032
TCONS_00060285 other downstream 306068 23768377 ~ 23770557 (-) True XLOC_031030
TCONS_00060284 other downstream 318038 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060280 other downstream 361626 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060260 other downstream 735002 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060312 other upstream 113882 24199933 ~ 24201432 (-) True XLOC_031046
TCONS_00060314 other upstream 127126 24213177 ~ 24218717 (-) True XLOC_031047
TCONS_00060319 other upstream 166408 24252459 ~ 24259292 (-) True XLOC_031051
TCONS_00060324 other upstream 403824 24489875 ~ 24489974 (-) True XLOC_031056
TCONS_00060328 other upstream 448407 24534458 ~ 24535877 (-) True XLOC_031058

Expression Profile

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