RNA id: TCONS_00060305


Basic Information

Item Value
RNA id TCONS_00060305
length 1697
RNA type mRNA
GC content 0.46
exon number 9
gene id XLOC_031043
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 24116428 ~ 24127432 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGAGCTTCACACAGTCAATGCCTCAATAACTGTTTGGCCTTTGTAAGTTACCGAGGGGTAAATAGCAGGAAGTTATGAGGCAAGTCAGTCAACTGTATATGCAGAAGAGGTGGTTGTTCAGGCAGCTGTTACATTTAAGAGCTGTCAGGAGCTGGACTGACATCAGCAAACACTGTTGCATTAAGCAGGATGCTTAATCTGCGGGCAGCTCAGAGCCAGTTCACCCATGAAGTGCGAGAGCCTGGGCTATGGGTTTGGAGGGTGGAGAAGATGAAGGCTGTGCTCCTTGACCCTTCGCAGAGGGGGATCTTCTACAATGGAGATGCGTACATCGTGCTCAGCAACCGTGGAAAGGATGGAAGTGACCTGCACATGTGGATGGGGGAAAAGTCTTCCCCGGATGAGCAGGGTGCTTGTGCCATGCTTGCCACTCAACTGGACAGCTTCTTGGGAGGAGAGCCAGTGCAACACAGACAGGTGCAGGGCTTCGAGTCACATGAATTCATGGGACTTTTTCCTAAAGGAGTCAGCTATAAGGAGGGTGGGGTGGAGTCAGGCTTCAAGAGTGCCAGGTCTAGAATTGATCCTGTTAAATATCTGTACCAAGTCAAAGGAAAGAAAAACATCCGCGCAAGAGAGGTGGAGTTTAGCTGGGGGAGCTTCAACAAGGGGGACTGTTTCATACTGGACCTGGGAGAGAATATAGTCGTATGGATTGGTTCCAAAGCCAACATGTTTGAGCGACAGAAGGTGCGTGAGATAGCAATGCTGATCAGAGACACCGAGAGGAATGGCAAAGCTCACATCATTGATGTTCGAGAGGGAGAGGAACCAGTAGAGATGGTCAAGGCACTTGGTCCAGTTCCAGCTCTGAAGGACAGCTCAACAGAGGAAGACTCTGAAGCAGATATCACCAATTCTGCTTCCCTTTACAAGGTGTCTAATGCAACAGGCCAAATGACTTTAACAAAACTGTGTGACAAAGGACCTTTCGGTCAAGAGCTGCTGGAGAAAGACGACTGCTTCATACTGGACAATGGATCCAATGGGAAGATCTATGTTTGGAAAGGGAATGGAGCTAATGCAGAGGAGAAGAGAGTCGCCTTGAAGGTAGCAGATGAGTTTATTACCGAGATGAATTACCCCAGGATGAGAACGCAGGTGGAAATTCTCCCTCAGGGTCGTGAATCGGTGCTCTTCAAACAGTTCTTCAAGAGCTGGAGTTAAACATCAACACCAGCAGGATGTATGATACTCTTTTTGTATTATCGCACAGCATACTAGCCTTGAGTGGTGTAGAAGACTACCTGTTGAAACTCTTTGCTGTTAGCCAAAGGATTGCTTGTTTATTATGAACGGGActgttgtcatttttatttaaaaaaaaatgcctatttaagaataatgtttttaaaaaggccATTTAAATTGTTCAATAATTGTCTGTCAAATGCAAAATTAAAAGTATAAAACATAACTCAAAGTTCTGGTATTATGTGAATTTGaaatttccgggtttctcagtagcagattTAATCACAGCTGGGTAAACTTCGAGAGTAGTGAATGGCAGCGAGtgggagagcggggcacaaagtaacactttttggttgtggccaaataatgaacaaagtaacgGGAAtagacaggcccggattggctaatcgggaggaccgggagaattcccggtgggccg

Function

GO:

id name namespace
GO:0008154 actin polymerization or depolymerization biological_process
GO:0051014 actin filament severing biological_process
GO:0051016 barbed-end actin filament capping biological_process
GO:0015629 actin cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005546 phosphatidylinositol-4,5-bisphosphate binding molecular_function
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-6 Predicted to enable actin filament binding activity and phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in actin filament severing; actin polymerization or depolymerization; and barbed-end actin filament capping. Predicted to be active in actin cytoskeleton and cytoplasm. Orthologous to human CAPG (capping actin protein, gelsolin like).

Ensembl:

ensembl_id ENSDART00000154313

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061996 lncRNA downstream 30292 24076625 ~ 24086136 (-) True XLOC_031041
TCONS_00061995 lncRNA downstream 30377 24076625 ~ 24086051 (-) False XLOC_031041
TCONS_00061994 lncRNA downstream 30474 24076625 ~ 24085954 (-) False XLOC_031041
TCONS_00060291 lncRNA downstream 311099 23789189 ~ 23805329 (-) False XLOC_031032
TCONS_00061993 lncRNA downstream 660194 23446244 ~ 23456234 (-) True XLOC_031017
TCONS_00060318 lncRNA upstream 113609 24241041 ~ 24244557 (-) True XLOC_031050
TCONS_00061997 lncRNA upstream 134799 24262231 ~ 24267113 (-) True XLOC_031052
TCONS_00060322 lncRNA upstream 163211 24290643 ~ 24292159 (-) False XLOC_031053
TCONS_00060321 lncRNA upstream 163211 24290643 ~ 24292159 (-) True XLOC_031053
TCONS_00061998 lncRNA upstream 279921 24407353 ~ 24414457 (-) True XLOC_031055
TCONS_00060304 mRNA downstream 4253 24102499 ~ 24112175 (-) True XLOC_031042
TCONS_00060303 mRNA downstream 71551 24032358 ~ 24044877 (-) True XLOC_031040
TCONS_00060302 mRNA downstream 71704 24031314 ~ 24044724 (-) False XLOC_031040
TCONS_00060301 mRNA downstream 87200 24009668 ~ 24029228 (-) True XLOC_031039
TCONS_00060300 mRNA downstream 107431 24002598 ~ 24008997 (-) True XLOC_031038
TCONS_00060308 mRNA upstream 11014 24138446 ~ 24154064 (-) False XLOC_031044
TCONS_00060309 mRNA upstream 11346 24138778 ~ 24154437 (-) True XLOC_031044
TCONS_00060310 mRNA upstream 37709 24165141 ~ 24174956 (-) True XLOC_031045
TCONS_00060311 mRNA upstream 71748 24199180 ~ 24201437 (-) False XLOC_031046
TCONS_00060313 mRNA upstream 80981 24208413 ~ 24219344 (-) False XLOC_031047
TCONS_00060289 other downstream 320738 23789189 ~ 23795690 (-) False XLOC_031032
TCONS_00060285 other downstream 345871 23768377 ~ 23770557 (-) True XLOC_031030
TCONS_00060284 other downstream 357841 23757933 ~ 23758587 (-) True XLOC_031029
TCONS_00060280 other downstream 401429 23703457 ~ 23714999 (-) True XLOC_031026
TCONS_00060260 other downstream 774805 23331153 ~ 23341623 (-) True XLOC_031015
TCONS_00060312 other upstream 72501 24199933 ~ 24201432 (-) True XLOC_031046
TCONS_00060314 other upstream 85745 24213177 ~ 24218717 (-) True XLOC_031047
TCONS_00060319 other upstream 125027 24252459 ~ 24259292 (-) True XLOC_031051
TCONS_00060324 other upstream 362443 24489875 ~ 24489974 (-) True XLOC_031056
TCONS_00060328 other upstream 407026 24534458 ~ 24535877 (-) True XLOC_031058

Expression Profile

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