RNA id: TCONS_00060513


Basic Information

Item Value
RNA id TCONS_00060513
length 684
RNA type processed_transcript
GC content 0.49
exon number 2
gene id XLOC_031158
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 30929047 ~ 30930288 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttaaagagcccatattatacatgaaatagggtcatatcctggttgtaagggtctccaacaacagtctaatatgcatgcaaggtcaaaaaacactttcatggtcttataatctgcatttatttttagctaattatcccagcgactcctgtatgaatcgtccagtgattcatttgttcccaaacccctccttagcgcggagctaatctgcgctgattggaccgatgacagtctgtcgcgattggtcgactgccttcagtcagagagggaaatggccaatagctaatcagcaatttaaaaagtaatcacagttcatacacgctcgatagtgtagacgtggattttagctgccacactatggcgagtggatggtgccacggataaccgaacgaaggagacagtcgtgtactcgccataccacacacacacaaaaacacacacacacctccggatgacaacgctcccgcttccgcccgcacccgccaggctttagcctgagaacccgctctgttttctgcccgccgcgcccggtcccgctagagcggagaacacaaccaaaaatcacccagtatacagtccagacagccaagctgtctgtataaacacacacacacagcacaaagcacacaaagctcgttcgttcgttcgttcgttcgctctctctctctctctctctctctctctctc

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136028

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062024 lncRNA downstream 877489 30036486 ~ 30051558 (-) True XLOC_031140
TCONS_00062023 lncRNA downstream 1027944 29896636 ~ 29901103 (-) True XLOC_031139
TCONS_00062022 lncRNA downstream 1174708 29746319 ~ 29754339 (-) False XLOC_031136
TCONS_00060479 lncRNA downstream 1257430 29670040 ~ 29671617 (-) True XLOC_031135
TCONS_00062021 lncRNA downstream 1335526 29589820 ~ 29593521 (-) True XLOC_031133
TCONS_00062025 lncRNA upstream 152051 31082339 ~ 31113121 (-) True XLOC_031161
TCONS_00062026 lncRNA upstream 335986 31266274 ~ 31269164 (-) False XLOC_031162
TCONS_00062027 lncRNA upstream 335986 31266274 ~ 31274665 (-) True XLOC_031162
TCONS_00062028 lncRNA upstream 744365 31674653 ~ 31676807 (-) True XLOC_031165
TCONS_00062029 lncRNA upstream 760802 31691090 ~ 31692364 (-) True XLOC_031166
TCONS_00060510 mRNA downstream 4594 30802798 ~ 30924453 (-) False XLOC_031157
TCONS_00060511 mRNA downstream 4684 30806796 ~ 30924363 (-) False XLOC_031157
TCONS_00060512 mRNA downstream 4700 30890848 ~ 30924347 (-) True XLOC_031157
TCONS_00060509 mRNA downstream 213822 30707133 ~ 30715225 (-) True XLOC_031156
TCONS_00060508 mRNA downstream 224657 30702084 ~ 30704390 (-) True XLOC_031155
TCONS_00060514 mRNA upstream 26693 30956981 ~ 30984271 (-) False XLOC_031159
TCONS_00060515 mRNA upstream 29459 30959747 ~ 30984010 (-) False XLOC_031159
TCONS_00060516 mRNA upstream 29471 30959759 ~ 30978381 (-) True XLOC_031159
TCONS_00060517 mRNA upstream 101861 31032149 ~ 31035198 (-) True XLOC_031160
TCONS_00060519 mRNA upstream 509102 31439390 ~ 31470426 (-) False XLOC_031163
TCONS_00060495 other downstream 536455 30390893 ~ 30392592 (-) True XLOC_031147
TCONS_00060456 other downstream 1776613 29149201 ~ 29152434 (-) False XLOC_031122
TCONS_00060435 other downstream 2375293 28552987 ~ 28553754 (-) True XLOC_031114
TCONS_00060430 other downstream 2887337 28037942 ~ 28041710 (-) False XLOC_031109
TCONS_00060419 other downstream 3834709 27094224 ~ 27094338 (-) True XLOC_031102
TCONS_00060528 other upstream 752011 31682299 ~ 31689866 (-) True XLOC_031164
TCONS_00060550 other upstream 1199194 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060551 other upstream 1199275 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060554 other upstream 1204914 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060558 other upstream 1239882 32170170 ~ 32170286 (-) True XLOC_031181

Expression Profile

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