RNA id: TCONS_00060520


Basic Information

Item Value
RNA id TCONS_00060520
length 1384
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_031163
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31439390 ~ 31470426 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCCGCCCTTAAGAAGTTTATTCGCCAGAACATGAATTTGCTTTACAGCCACAAGAGGACAGAGGGATGAAGAACAATGCAAAGTGGGCGGTTTACTTTCAGAAGAGTTTGGTTTGGAAGAGAAAGAGAgcgaaagaaagagaaagagacagaTAATGCTGAGGGGTGGAAGGAAGTCTGAGATCAGCTCACCAAACACATCTTAAGAGGGCTGTCTAGGACGTCTCAAGAACACTGTGAAGACAGACTGAAGGATATATTGCATCTGTGGAGACTTCTCTTTCAATGACTAGGATGAAATCTGCAATAAAGAAAACTTTTTCAAACTTCTTCTTTGAATATGAGACTCCTCGGGAGGTTCTGGTCAAGAACAGAAGGGTTGCAATAGTGTGCAGAATCATCCAACTAGGCGTTTTAGCCTACATCATTGGGTGGGTGTTCATGTATGAGAAAGGCTACCAGACGGTGGACAATGCCATCGGCTCAGTCTTCACCAAGATGAAGGGAGTGTCCTTCACTAATATCAGTGGACAGGAGCGGATATGGGATGTAGCCGATTATGTGTTTCCTGAACAGggaGACTCATCTTTCGTTGTGATGACCAACTTCATTCCCACTATAGGACAGctgccGGATGGGAAGAACAAGTGCACCAATGACTCAGACTGTGATGACAGCAAATACAAACGTACGGGCAATGGGCACATGACGGGCAGCCCTCCAATCCTACTGACAGCAGAAAACTACACACTATTCATCAAAAACTCCATTACCTTTCCCCAGTTTGATGTAGTCAGGAGTAACTTGGTGGAGGGTATTGATCAGAATTACATCAATAACTGTGTGTATCACCCCAAAACTGCTCCGCTGTGTCCTATCTTCAGACTGGGTGACATTGTTGAGCGATCCGGGTTCAGTTTCTCAGAAATAGCTCGTGTGGGAGGTGCTATAGGAGTCCTCATTGACTGGGACTGCAATCTGGACCTGAGTATCAGATTCTGCAAACCAAAATATGAGTTCTATGGTCTTTATGGAACTGGGAAAAACGACCAAGTAGATAAAGCATCTCTGGGATACAATTTTAGATTTGCTAAATATTATGTGGAGAATAGTGTGCAGAAGAGAACACTGATGAAGGTGTTTGGTGTGCGGATAGACATTATTGTTCATGGGCTggcAGGAAAATTTGATATAATACCAACGCTGACAGCGATAGGTTCAGGAGTAGGAATATTTGGAGTGGCCACTGTTGTGTGTGATTTGCTACTCCTATATATACTTCCAAAGAAGAATTTCTACAAAACCATGAAATTTAAAGATGCAGAAATCTGTGAAGAGACCCCAGCCTTGCCCCAGACACAAGAAGACAGCGAGTCACAGAAG

Function

GO:

id name namespace
GO:0033198 response to ATP biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005639 integral component of nuclear inner membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0005216 ion channel activity molecular_function
GO:0004931 extracellularly ATP-gated cation channel activity molecular_function
GO:0001614 purinergic nucleotide receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04611 Platelet activation
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-030319-1 Enables extracellularly ATP-gated cation channel activity. Predicted to act upstream of or within cation transmembrane transport and response to ATP. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be integral component of nuclear inner membrane. Is expressed in hypothalamus and midbrain. Orthologous to human P2RX1 (purinergic receptor P2X 1).

Ensembl:

ensembl_id ENSDART00000130843

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062027 lncRNA downstream 167643 31266274 ~ 31274665 (-) True XLOC_031162
TCONS_00062026 lncRNA downstream 173144 31266274 ~ 31269164 (-) False XLOC_031162
TCONS_00062025 lncRNA downstream 329187 31082339 ~ 31113121 (-) True XLOC_031161
TCONS_00062024 lncRNA downstream 1390750 30036486 ~ 30051558 (-) True XLOC_031140
TCONS_00062023 lncRNA downstream 1541205 29896636 ~ 29901103 (-) True XLOC_031139
TCONS_00062028 lncRNA upstream 204449 31674653 ~ 31676807 (-) True XLOC_031165
TCONS_00062029 lncRNA upstream 220886 31691090 ~ 31692364 (-) True XLOC_031166
TCONS_00061538 lncRNA upstream 631080 32101284 ~ 32102880 (-) False XLOC_031177
TCONS_00061539 lncRNA upstream 631080 32101284 ~ 32103326 (-) True XLOC_031177
TCONS_00062030 lncRNA upstream 659278 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060517 mRNA downstream 407110 31032149 ~ 31035198 (-) True XLOC_031160
TCONS_00060514 mRNA downstream 458037 30956981 ~ 30984271 (-) False XLOC_031159
TCONS_00060515 mRNA downstream 458298 30959747 ~ 30984010 (-) False XLOC_031159
TCONS_00060516 mRNA downstream 463927 30959759 ~ 30978381 (-) True XLOC_031159
TCONS_00060512 mRNA downstream 517961 30890848 ~ 30924347 (-) True XLOC_031157
TCONS_00060523 mRNA upstream 170677 31640881 ~ 31689796 (-) False XLOC_031164
TCONS_00060522 mRNA upstream 170677 31640881 ~ 31689796 (-) False XLOC_031164
TCONS_00060521 mRNA upstream 170677 31640881 ~ 31689796 (-) False XLOC_031164
TCONS_00060524 mRNA upstream 174256 31644460 ~ 31689911 (-) False XLOC_031164
TCONS_00060525 mRNA upstream 174932 31645136 ~ 31689796 (-) False XLOC_031164
TCONS_00060513 other downstream 512020 30929047 ~ 30930288 (-) True XLOC_031158
TCONS_00060495 other downstream 1049716 30390893 ~ 30392592 (-) True XLOC_031147
TCONS_00060456 other downstream 2289874 29149201 ~ 29152434 (-) False XLOC_031122
TCONS_00060435 other downstream 2888554 28552987 ~ 28553754 (-) True XLOC_031114
TCONS_00060430 other downstream 3400598 28037942 ~ 28041710 (-) False XLOC_031109
TCONS_00060528 other upstream 212095 31682299 ~ 31689866 (-) True XLOC_031164
TCONS_00060550 other upstream 659278 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060551 other upstream 659359 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060554 other upstream 664998 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060558 other upstream 699966 32170170 ~ 32170286 (-) True XLOC_031181

Expression Profile

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