RNA id: TCONS_00060528



Basic Information


Item Value
RNA id TCONS_00060528
length 851
RNA type processed_transcript
GC content 0.41
exon number 2
gene id XLOC_031164
representative True

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31640881 ~ 31689911 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATCGATCCCGTTGCAGGGACAACCAACAAGCTGATGTTGCTGAAACGCACACAGTGAAAACGCTGACACGATGGATTTCAATGTCAAGAAACTAGCGTCGGACGCAGGTGTCTTCTTCACTCGGGCAGTCCAGTACACAGAGGAGAAGCTTGGCCAGGCAGAAAAGACTGAGTTAGATGCCCATCTGGAGAATCTGATCGCTCGAGCAGACTGTACCAAAAACTGGACAGAGAAGATCTTCAGACAGACCGAAGTGCTGCTTCAACCCAACCCAAGTAAGAATGAACCCAGCAGTTTTAGCCACTTCACTGTGTTTTCTCAAAGCTAATAGTCTGTAGttagatttaatttaataaatagaaatatatgtCATTGGCTTTTAAATGTTGAGCCAAAAAATGCCTCATGTTGTTGACATTTCCCACTAAGGGACATTCCTGTTTGTTGGCTAAATCAATCTGCTTTAATGTCGCCATTTGCTTGATTACCTGTGCGTCTgtgaaaaaatactttaaaaagagATTTGAGAAATCAAATGTCTGGTTTATTCCTGGATAGTCGACAACAAGTGACACAGGATGCTTGACCACCATGTTAAAACCGCAGTGCTGCTTAGGTGTCACTATTTCAGTCTTCGTGATATGTCAGTGTATTATCTCTGAAATTCttgatgcttttaaaatgatCTTTCTTTTAGCTGCGGTAGTTTCACTAATGAAAGAGTAGGCATGTGTTTTATTAGGGTGCTGAAAAACAGTGAACTGCATAGCGGTTAAAATCTGAGCTGTTAATCATTACTGTGCTCTTGAACAGGACGTTTCACCTCTGGTCACTGGGAGTGCAAAGGATAA

Function


GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-833 Predicted to be located in cytoplasm. Is expressed in central nervous system; eye; immature eye; lens; and solid lens vesicle. Orthologous to human SH3GLB2 (SH3 domain containing GRB2 like, endophilin B2).

Ensembl:

ensembl_id ENSDART00000147139

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00062028 lncRNA downstream 5492 31674653 ~ 31676807 (-) True XLOC_031165
TCONS_00062027 lncRNA downstream 407634 31266274 ~ 31274665 (-) True XLOC_031162
TCONS_00062026 lncRNA downstream 413135 31266274 ~ 31269164 (-) False XLOC_031162
TCONS_00062025 lncRNA downstream 569178 31082339 ~ 31113121 (-) True XLOC_031161
TCONS_00062024 lncRNA downstream 1630741 30036486 ~ 30051558 (-) True XLOC_031140
TCONS_00062029 lncRNA upstream 1224 31691090 ~ 31692364 (-) True XLOC_031166
TCONS_00061538 lncRNA upstream 411418 32101284 ~ 32102880 (-) False XLOC_031177
TCONS_00061539 lncRNA upstream 411418 32101284 ~ 32103326 (-) True XLOC_031177
TCONS_00062030 lncRNA upstream 439616 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060553 lncRNA upstream 439616 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060519 mRNA downstream 211873 31439390 ~ 31470426 (-) False XLOC_031163
TCONS_00060518 mRNA downstream 211873 31439390 ~ 31470426 (-) False XLOC_031163
TCONS_00060520 mRNA downstream 212095 31442308 ~ 31470204 (-) True XLOC_031163
TCONS_00060517 mRNA downstream 647101 31032149 ~ 31035198 (-) True XLOC_031160
TCONS_00060514 mRNA downstream 698028 30956981 ~ 30984271 (-) False XLOC_031159
TCONS_00060529 mRNA upstream 3450 31693316 ~ 31712399 (-) True XLOC_031167
TCONS_00060530 mRNA upstream 24492 31714358 ~ 31716713 (-) True XLOC_031168
TCONS_00060531 mRNA upstream 33538 31723404 ~ 31773209 (-) False XLOC_031169
TCONS_00060532 mRNA upstream 33996 31723862 ~ 31773208 (-) False XLOC_031169
TCONS_00060533 mRNA upstream 34526 31724392 ~ 31772559 (-) True XLOC_031169
TCONS_00060513 other downstream 752011 30929047 ~ 30930288 (-) True XLOC_031158
TCONS_00060495 other downstream 1289707 30390893 ~ 30392592 (-) True XLOC_031147
TCONS_00060456 other downstream 2529865 29149201 ~ 29152434 (-) False XLOC_031122
TCONS_00060435 other downstream 3128545 28552987 ~ 28553754 (-) True XLOC_031114
TCONS_00060430 other downstream 3640589 28037942 ~ 28041710 (-) False XLOC_031109
TCONS_00060550 other upstream 439616 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060551 other upstream 439697 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060554 other upstream 445336 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060558 other upstream 480304 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060574 other upstream 706027 32395893 ~ 32396909 (-) True XLOC_031189