RNA id: TCONS_00060531


Basic Information

Item Value
RNA id TCONS_00060531
length 2469
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_031169
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 31723404 ~ 31773209 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTTAGCTTTTTACTCAACGCCAATCAGTTGATTTTGATACGGTTAAACTCTGGTTAGTAGTAATTATATGATGGGACGTTTTTTAAGTCATCCCGTCCACTGATTCCTGTTCTGGCTGCCACATGAAAACGGCTCGTCGACTCGAGACTGTAGCTTTCTCACAGTGCTGCCCAGTAAAGTGCTTTTAAGAGATGCTGAACCAAAGCACATTCATTGAGGACTTTCAAGCACCAGATTAAAGGAAACGCAGCCTGAATTTGTCTACCTCCATCTTCAGTTATCCACagtctcagaagaaaaaaaaacatggcgtTTTTAATGAAAAAGAAGAAGTTCAAGTTTCAGATACACTTCACCCTGGAGGAGCTCACGGCTGTGCCGTTTGTGAATGGGATGCTCTTCTGCAAAATCAGACTGTTGGATGGTGGAGACTTTTCCATTTCTTCATCCAGGCAGGAGGTTCAGGAGAACTGTGTTCGCTGGCGAAAGAAGTTTTCCTTTGTGTGTAAAATGAGTGCCAGTCCTGCCACAGGGGTCCTGGATCCCTGCATTTGCCGAGTGTCTGTGCGTAAGGAACTAAAAGGTGGAAAGGCTTTTTCAAAGCTGGGCTTTGCTGACCTCAACTTGGCGGAGTTTGCTGGTTCAGGCTCCACTGTTCGCTGCTGTATACTGGAGGGCTACGACACAAAGAACACTCGACAAGACAACTCCATACTCAAGGTTACCATTGGCATGACTTTGCTCTCTGGAGATCCCTGCTTCAAAACGCCTGTGAGCACAGCTAAGACCATTGCCATGGCTGGCCAGGACCCCTCTCTGCAGCTGGACCGCAAGGGAGAGGGCACCGCTGACCACCCTGTGCCAACCCTCAGCCGCAACACTCGCAGATCAATCAAAAGCAGGACCCCGCTGAACAACTCTGGAGGCCTTCAGGAGGGATTGGAGGAGAACCTGTCCAGTCCTGATGAAGTGTTTCACAATGGACACTCACGAAACTCCAGCTTTGCCAGCCAACAGAGCAAAATCTCAGGCTGCAGCGCAGAGCACTCACACTCCTCCAGCCTGACAGATCTGTCCCAGCACCGGCGCAACACCTCCACCAGCAGCAGCAACACATCAGGAGGCACGTCTACAACTGTGGAGAGCCCAGCAGACCAAGAGAAAGAGCTGCTGAAACCAGAAAGACCCCCTCGGCCCCCACGACCCACTCTGCCCCTAAACAGACTCTCAAGGAGGAAGAAGGACTCTGTAGAAAATCATCCCACATGGGTTGACGACACGCGCATCGATGCAGATGATATTGTGGAGAAGATTGTCCAGAGTCAAAACTTTGCCGATGTCAGCAACAATGAAGACAGCAATTTAACACTGTTTATCAGCAGAGATGGGACCACAGCATTGAGTGGCATCCAGCTTGTCAACAGGGTGTCTGCAGGTGTTTTTGAACCGGTGGTGATCGAGAGCCATTAGATCTGCAGTGTTAGTGGTCACTCTCTTGCACAGCCActgcctttttttgttttttttaatgatggagAAAGCAAGACAAGGACTGGACTTCACAACTCGCCCCTCTTATAAGAGTCTGACATTTTACTCGTATATTATTACAACCCTTACATACTGATCATGCAGTACAATTACTGACAAAAATGTCTTGGGAATTTTTTCGAAAAAGTTCATTGTCCTTAGAATTATTTTACAGAAGATTCTGAGAGAACAAACTACTTGAAATGCCTTAAGAAGTGAGGCAGGATGGGGAGCTTAAGTCGAACACTGTGAAATATGAGGGAAGTCCAAAGGATTTAGACTGAAAATTAAGTTCAtagttttattgaaattttatttcatgtttgaAAGTGGGaagtcttaatgtcttaagtTAGTTTTTTAAGCATTTACACCCCTATTATATACAAACCACTGAGTTTAGTCAGTAAGCAGCCCTTTAACGTGTGAGGAATGTTGATTAAGTATGTATGGCTGGCCATATAAACATTCTGAGGCAAAGAAAAAACAGTTCCTCCATGTGACCATTTTCAGTATCTCATTGCTTGTGCTTGTTCATCAGAGTTGGGCAGTGGTTTGCTTACATATTTCCCAGCTGGACTGGTGAACATGAAATACATTAATATACTGTATCTCCCCCCTTCCTTTTTTCCCCCTCTTTCTCTTTACTCTTTAAGATTTGAAGTTTAATACAAACTTCGTCTTTCCAACTTTCTGTTTTCCTTTTTAAGTTTTGCATTTTGCTGCTGGTTTCAGTTTAGAAAAATCGTGTGACTATGACTTTGTCTCTGGCAGCACTGCAATGCATGCAACACAGCACAACAGGCCATTTGTGGTGTTTGTTTGCTAGGGTTTTGTCACAGTCAGATCAGATGCCAGTGAGATCCTGCATTGTGTGGCTATAATGGGGTctaatgaaataattttttaaaacttttttagatTTCCCCttttaagtt

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-412 Orthologous to human FAM102A (family with sequence similarity 102 member A).

Ensembl:

ensembl_id ENSDART00000122066

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062029 lncRNA downstream 31040 31691090 ~ 31692364 (-) True XLOC_031166
TCONS_00062028 lncRNA downstream 46597 31674653 ~ 31676807 (-) True XLOC_031165
TCONS_00062027 lncRNA downstream 448739 31266274 ~ 31274665 (-) True XLOC_031162
TCONS_00062026 lncRNA downstream 454240 31266274 ~ 31269164 (-) False XLOC_031162
TCONS_00062025 lncRNA downstream 610283 31082339 ~ 31113121 (-) True XLOC_031161
TCONS_00061538 lncRNA upstream 328075 32101284 ~ 32102880 (-) False XLOC_031177
TCONS_00061539 lncRNA upstream 328075 32101284 ~ 32103326 (-) True XLOC_031177
TCONS_00062030 lncRNA upstream 356273 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060553 lncRNA upstream 356273 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060552 lncRNA upstream 356273 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060530 mRNA downstream 6691 31714358 ~ 31716713 (-) True XLOC_031168
TCONS_00060529 mRNA downstream 11005 31693316 ~ 31712399 (-) True XLOC_031167
TCONS_00060524 mRNA downstream 33493 31644460 ~ 31689911 (-) False XLOC_031164
TCONS_00060534 mRNA upstream 57267 31830476 ~ 31857345 (-) False XLOC_031170
TCONS_00060535 mRNA upstream 57269 31830478 ~ 31856681 (-) False XLOC_031170
TCONS_00060537 mRNA upstream 57269 31830478 ~ 31857593 (-) False XLOC_031170
TCONS_00060536 mRNA upstream 57269 31830478 ~ 31857593 (-) True XLOC_031170
TCONS_00060538 mRNA upstream 98840 31872049 ~ 31875645 (-) True XLOC_031171
TCONS_00060528 other downstream 33538 31682299 ~ 31689866 (-) True XLOC_031164
TCONS_00060513 other downstream 793116 30929047 ~ 30930288 (-) True XLOC_031158
TCONS_00060495 other downstream 1330812 30390893 ~ 30392592 (-) True XLOC_031147
TCONS_00060456 other downstream 2570970 29149201 ~ 29152434 (-) False XLOC_031122
TCONS_00060435 other downstream 3169650 28552987 ~ 28553754 (-) True XLOC_031114
TCONS_00060550 other upstream 356273 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060551 other upstream 356354 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060554 other upstream 361993 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060558 other upstream 396961 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060574 other upstream 622684 32395893 ~ 32396909 (-) True XLOC_031189

Expression Profile

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