RNA id: TCONS_00060549


Basic Information

Item Value
RNA id TCONS_00060549
length 642
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_031176
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32086448 ~ 32092856 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCAGTGCGTGCTGTGACTTCCAGGTTCATGTACAGGGGACTTTGCTCAATTCCAGATATCCTTTCCTACAGGGCTCCCGTCAGCCTCCCCGAGGATGAAGTGGAGGAGATCCGTGAAGCCTTTAAGGTGTTTGACCGTGATGGGAACGGATTCATCTCCAAACAGGAGCTAGGAGTGGCCATGCGGTCTCTTGGCTACATGCCAAATGAAGTGGAGCTGGAGGTGATCATTCAAAGACTGGACATGGACGGTGACGGTCAGGTTGACTTTGAAGAGTTTGTAGCGCTCCTCGGACCAAAGCTGTCTTCAGCTGGTATGCCAGACCGCTTCCACGGAGCTGAATTTGACTCCATATTCTGGAAGTGTGACATGCAAAAGCTAACTGTGGACGAGCTGAAGAGACTCCTGTATGAGACCTTCTGTGACCATTTGACTATGAAAGACATCGAGAACATCATCATGACTGAGGAGAGTCACTTAAACAGCCCGGAGTGCCAAGTAGATATTGACAGTAATCCCATGCAACAAGTCAAGCACACCTGTGTGCGAAAGAGCTTGATTTGTGCCTTCGCCATCGCGTTCATCATCAGCGTCATGCTCATCGCAGCCAATCAGATGCTTCGAAGAGGAATGAAATGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-366 Predicted to enable calcium ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain; dorsal thalamus; and tegmentum. Orthologous to human CABP7 (calcium binding protein 7).

Ensembl:

ensembl_id ENSDART00000181677

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062029 lncRNA downstream 394084 31691090 ~ 31692364 (-) True XLOC_031166
TCONS_00062028 lncRNA downstream 409641 31674653 ~ 31676807 (-) True XLOC_031165
TCONS_00062027 lncRNA downstream 811783 31266274 ~ 31274665 (-) True XLOC_031162
TCONS_00062026 lncRNA downstream 817284 31266274 ~ 31269164 (-) False XLOC_031162
TCONS_00062025 lncRNA downstream 973327 31082339 ~ 31113121 (-) True XLOC_031161
TCONS_00061538 lncRNA upstream 8428 32101284 ~ 32102880 (-) False XLOC_031177
TCONS_00061539 lncRNA upstream 8428 32101284 ~ 32103326 (-) True XLOC_031177
TCONS_00062030 lncRNA upstream 36626 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060553 lncRNA upstream 36626 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060552 lncRNA upstream 36626 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060546 mRNA downstream 11811 32060881 ~ 32074637 (-) False XLOC_031175
TCONS_00060547 mRNA downstream 11914 32061297 ~ 32074534 (-) True XLOC_031175
TCONS_00060545 mRNA downstream 143827 31931834 ~ 31942621 (-) True XLOC_031174
TCONS_00060544 mRNA downstream 157535 31918809 ~ 31928913 (-) True XLOC_031173
TCONS_00060543 mRNA downstream 159542 31914906 ~ 31926906 (-) False XLOC_031173
TCONS_00060556 mRNA upstream 62285 32155141 ~ 32158242 (-) False XLOC_031180
TCONS_00060557 mRNA upstream 62371 32155227 ~ 32158198 (-) True XLOC_031180
TCONS_00060559 mRNA upstream 169643 32262499 ~ 32274383 (-) False XLOC_031182
TCONS_00060560 mRNA upstream 169698 32262554 ~ 32273777 (-) True XLOC_031182
TCONS_00060561 mRNA upstream 188959 32281815 ~ 32292965 (-) False XLOC_031183
TCONS_00060528 other downstream 396582 31682299 ~ 31689866 (-) True XLOC_031164
TCONS_00060513 other downstream 1156160 30929047 ~ 30930288 (-) True XLOC_031158
TCONS_00060495 other downstream 1693856 30390893 ~ 30392592 (-) True XLOC_031147
TCONS_00060456 other downstream 2934014 29149201 ~ 29152434 (-) False XLOC_031122
TCONS_00060435 other downstream 3532694 28552987 ~ 28553754 (-) True XLOC_031114
TCONS_00060550 other upstream 36626 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060551 other upstream 36707 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060554 other upstream 42346 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060558 other upstream 77314 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060574 other upstream 303037 32395893 ~ 32396909 (-) True XLOC_031189

Expression Profile

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