RNA id: TCONS_00060554


Basic Information

Item Value
RNA id TCONS_00060554
length 796
RNA type processed_transcript
GC content 0.42
exon number 2
gene id XLOC_031179
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32135202 ~ 32136421 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATTATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGCGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTATTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGTACACAACAGGCATCAGTTGGACACCTCAAACCCCCATgaggatccacacacacacacgctcagttTTAATGGGTAAAgtttagaagggatacagctgcagatactcgcatcattcattcattttccttcagcttagtccttcatttatcaggggttgccacagcgaaatgagccaccaactactctg

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000134967

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062030 lncRNA downstream 2972 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060553 lncRNA downstream 2972 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060552 lncRNA downstream 2972 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00061539 lncRNA downstream 31876 32101284 ~ 32103326 (-) True XLOC_031177
TCONS_00061538 lncRNA downstream 32322 32101284 ~ 32102880 (-) False XLOC_031177
TCONS_00062031 lncRNA upstream 205822 32342243 ~ 32349712 (-) False XLOC_031187
TCONS_00060570 lncRNA upstream 205822 32342243 ~ 32357002 (-) True XLOC_031187
TCONS_00062032 lncRNA upstream 380250 32516671 ~ 32536749 (-) False XLOC_031193
TCONS_00062033 lncRNA upstream 399175 32535596 ~ 32536732 (-) True XLOC_031193
TCONS_00062034 lncRNA upstream 424159 32560580 ~ 32737158 (-) False XLOC_031194
TCONS_00060549 mRNA downstream 42346 32086448 ~ 32092856 (-) False XLOC_031176
TCONS_00060548 mRNA downstream 42346 32086448 ~ 32092856 (-) True XLOC_031176
TCONS_00060546 mRNA downstream 60565 32060881 ~ 32074637 (-) False XLOC_031175
TCONS_00060547 mRNA downstream 60668 32061297 ~ 32074534 (-) True XLOC_031175
TCONS_00060545 mRNA downstream 192581 31931834 ~ 31942621 (-) True XLOC_031174
TCONS_00060556 mRNA upstream 18720 32155141 ~ 32158242 (-) False XLOC_031180
TCONS_00060557 mRNA upstream 18806 32155227 ~ 32158198 (-) True XLOC_031180
TCONS_00060559 mRNA upstream 126078 32262499 ~ 32274383 (-) False XLOC_031182
TCONS_00060560 mRNA upstream 126133 32262554 ~ 32273777 (-) True XLOC_031182
TCONS_00060561 mRNA upstream 145394 32281815 ~ 32292965 (-) False XLOC_031183
TCONS_00060551 other downstream 3765 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060550 other downstream 4686 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060528 other downstream 445336 31682299 ~ 31689866 (-) True XLOC_031164
TCONS_00060513 other downstream 1204914 30929047 ~ 30930288 (-) True XLOC_031158
TCONS_00060495 other downstream 1742610 30390893 ~ 30392592 (-) True XLOC_031147
TCONS_00060558 other upstream 33749 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060574 other upstream 259472 32395893 ~ 32396909 (-) True XLOC_031189
TCONS_00060593 other upstream 1095443 33231864 ~ 33232766 (-) False XLOC_031204
TCONS_00060608 other upstream 1148135 33284556 ~ 33284626 (-) False XLOC_031208
TCONS_00060611 other upstream 1148487 33284908 ~ 33284983 (-) True XLOC_031208

Expression Profile

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