RNA id: TCONS_00060574


Basic Information

Item Value
RNA id TCONS_00060574
length 486
RNA type processed_transcript
GC content 0.38
exon number 2
gene id XLOC_031189
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32380026 ~ 32396929 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGGAGGCTCCCTTTTAGCCTAGCCAGCTAactccagagaaaaaaaaatacagaaaaaacagCAATGAACTTGCTTTAAATTCACGTAtgatattaaattgttaaataatacAGTCGTAAACCGTGAACGATTATAGATCGATTACATTTTCTGAGTCAAAGCGTTTCCGTTAGATTCATACTGTACATAATAATGCTAGAGTGGGACTCTAGATGTTTAATTAATGGCAGCTGACGGGGAGATTTGCTCATTTTTGTTCATGATTAATGTTTTAATTGTCACCCGACTAATTCAGATTATGACTCGACTGTGAAAACGAAAGTTTCTCCTTTGTAGAGCGATATCGATTTGAGTTGACACCTGTTAGCTAGCGCGGCTAGCTAGCGCTCTCCTCGTACTGATTCTACTGGAAATGAGATCACAAGTGCTCAGCATCACATTATCATCATCACAGCATAAACTGCACCtcaaaaagaagacaaaaa

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-050522-303 Orthologous to human FBXW2 (F-box and WD repeat domain containing 2).

Ensembl:

ensembl_id ENSDART00000142095

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060570 lncRNA downstream 38891 32342243 ~ 32357002 (-) True XLOC_031187
TCONS_00062031 lncRNA downstream 46181 32342243 ~ 32349712 (-) False XLOC_031187
TCONS_00060555 lncRNA downstream 259534 32135202 ~ 32136359 (-) False XLOC_031179
TCONS_00062030 lncRNA downstream 263663 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00060553 lncRNA downstream 263663 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00062032 lncRNA upstream 119762 32516671 ~ 32536749 (-) False XLOC_031193
TCONS_00062033 lncRNA upstream 138687 32535596 ~ 32536732 (-) True XLOC_031193
TCONS_00062034 lncRNA upstream 163671 32560580 ~ 32737158 (-) False XLOC_031194
TCONS_00062035 lncRNA upstream 187547 32584456 ~ 32737156 (-) False XLOC_031194
TCONS_00060580 lncRNA upstream 229101 32626010 ~ 32737091 (-) False XLOC_031194
TCONS_00060573 mRNA downstream 12418 32381436 ~ 32383475 (-) False XLOC_031189
TCONS_00060571 mRNA downstream 32521 32360336 ~ 32363372 (-) True XLOC_031188
TCONS_00060567 mRNA downstream 57021 32323775 ~ 32338872 (-) False XLOC_031186
TCONS_00060566 mRNA downstream 57027 32323775 ~ 32338866 (-) False XLOC_031186
TCONS_00060568 mRNA downstream 59280 32323878 ~ 32336613 (-) False XLOC_031186
TCONS_00060575 mRNA upstream 5117 32402026 ~ 32445835 (-) False XLOC_031190
TCONS_00060576 mRNA upstream 5978 32402887 ~ 32424402 (-) True XLOC_031190
TCONS_00060577 mRNA upstream 63544 32460453 ~ 32489796 (-) True XLOC_031191
TCONS_00060578 mRNA upstream 102161 32499070 ~ 32505280 (-) False XLOC_031192
TCONS_00060579 mRNA upstream 103444 32500353 ~ 32505109 (-) True XLOC_031192
TCONS_00060558 other downstream 225607 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060554 other downstream 259472 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060551 other downstream 264456 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060550 other downstream 265377 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060528 other downstream 706027 31682299 ~ 31689866 (-) True XLOC_031164
TCONS_00060593 other upstream 834955 33231864 ~ 33232766 (-) False XLOC_031204
TCONS_00060608 other upstream 887647 33284556 ~ 33284626 (-) False XLOC_031208
TCONS_00060611 other upstream 887999 33284908 ~ 33284983 (-) True XLOC_031208
TCONS_00060612 other upstream 888617 33285526 ~ 33285597 (-) True XLOC_031209
TCONS_00060613 other upstream 889678 33286587 ~ 33286658 (-) True XLOC_031210

Expression Profile

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