RNA id: TCONS_00060575


Basic Information

Item Value
RNA id TCONS_00060575
length 3127
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_031190
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32402026 ~ 32445835 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACACAGATCGCGGTGACAACACTCCCGcgcccgcgcacacacacacgcacaaagagagagaaagagggtgtgtgagagagagagcgaatgCGTGTGCATGTCTGAGAGTCAGTCATTCAGTGAATCGTTCCCTCTTCCTGTGCACAGACGCAAACAGTTGCGAGCTCCTAACAACGGAGTGCCTCTGCTGGACTCGAGCTCTGCCCTGAGCAGCTGAGGAACCGCAGACGCTGGAGGAAGAGGTGGAGGAAAGGGAGGAGGGACACCGGTGAACAGATTAAAGCCCTCTCTGCTTCTCTCCCTCTTTCATTCCCTCCGAGTGAGGAGAGACAACTCTGGGCTCTGCATGCTGTAATCACATTGCTTCTGTGTAATTTGCTCCTCTCAATTACTTGTCCTTCCTCCTCTTGTTTGAACTCTGCTGCGGTCTGGAGGAAAGGCACCATTCAAAGGACTTGTGCCTCTCGCGTGCTTTTCCCTCTTCtctttccttctttctctctcattctttctctctttaAATGTGAGTGGAAGGTGGGATTGGGGGAGTGATTTAGGGAGTGGGATAAAGCGTTGTGGCCAGCTGGAGAGATGGGCAAATCCAACAGCAAACTAAAGCCTGAGGTAGTGGAAGATTTGTGCAGAAAGACCTACTTCACAGAGAAGGAAGTACAGCAGTGGTATAAGGGTTTTATTAAAGACTGCCCCAGTGGTCAACTGGACTCCTCTGGCTTTCAGAAGATCTACAAGCAGTTCTTCCCTTTCGGTGATCCAACCAAATTTGCCACATTCGTCTTCAATGTCTTTGACGAGAACAAGGATGGACGCATTGAGTTCTCAGAGTTTATTCAAGCTCTGTCTGTCACATCAAGAGGAACACTGGATGAAAAACTCAGATGGGCCTTTAAACTTTACGATCTTGATAATGATGGCTACATAACTCGCGATGAGATGCTGAACATCGTGGACGCCATCTACCAGATGGTGGGGAACACAGTGGAGTTACCTGAAGAGGAAAACACACCAGAAAAACGAGTTGATCGCATCTTTGCTATGATGGATAAGAATGCAGATGGGATGTTGACTCTACAGGAGTTTCAGGAGGGCTCTAAGGCTGACCCGTCTATTGTACAGGCACTGTCTCTTTATGACGGATTGGTTTAGGACCATCTCAAAGTGACATTCAGTGATCAATACAACACATTTATGTCATTCTGCTGGCACTGTGAGAGGAAAGCTGACCTGTCACCATTCTCCTGGACATGCCAACACAGAGGTGCGTTGTGGGAAATGCTCTTGGGAGGcgatcagctgtcaatcactcatcTCCACTGTCACTGGAAAACCAAAATCCTTTGCAGAACTCAATCGGGAAGAACGATGCACACTAAAAGGTGACTTCAACGCCCTTTTGtgtgaataaaaaaagagacaCTCATATGGGCAGTGACTTTGAGGGCATCCACATCAGTGTTATTAAATGTGTATAAGTCATATAATCTAAACACCAATGAGTTAATGGTGTTTGCCATATGTGATTGAATGGACCTAGCTGGATTTTGGTCTAGACTTCGCTACACGATGAAACAAGATGAAGTTACAAGCACTGGCATTGAACAACATGTAgttatttatataacattattatGTAAATCAGCATCATTCAACAATAAACAACAACTGATCGTTAGGCCTTATAAAACCAATGCTTATTCTTCAGAATCAGTAGTTAAACTTTAATAGCCCCGGCGTATTATTGTAAGAGACTGTATCTGCTGACATGCTTGACCCACAGGCAGTCTTACTGTGCACTTTGTGATGTAGAATGCAACTTTTCGACAGTATTACATATGACTGTTGTGATGGTGTGGGCGTAAACGCGATGCATTCAACACTCATCTTGTACTAGTAGCAAATATATATAACAATCTCCGCACATGCCCACAGTATTCGAAAATCTGCACGTTGTTGGTATATTTATATTTCTGGTAATATTGGCAGGGTGGATAAAATGACACTGCTTTGAAATGaactgtcatgtttttttttttgtttttttttttgaagctcaACATTTTGTCTTTCTAATATTGTCATCTAGTAATGTTACATGGCCTGTCTGCTGTCCACTTACAAAATGCACTGTTGAGTTTGTCTTCATGTCACCCAGACACTGCAGTAGATGAAATATTGTGGTTATGGGGTAACAATAATGCAGTATAATCCTAACGGGCTctcttaaataaaaacatttttaaataaaatacctgGTTGTATTTTTAGAGTGTGtcttttgtttgtgttgtttaagGCTCTCAATCAGGAAGTAAAGGCACAATCTTATTGTTGAAAAGGGGCGGAGCAcagcagcttatttgcatttgaAAAGACACGTGAAAAATCTGCATGTTTTATGTTAGTACAGTATGGTATAATAAATTGTCTGTGAGCCATTTTGAGTGGAGACCTAACAAGCACATTCCTTGATAACCTGAGACTTTAATATTACAATTCATGTACAGAACCAAACCATCATATAATGGTATAATAATAGAATGGTAGAACAAAACCATTATTAACAATATAGCTAGTAATTATCGGAGCCAAGCAGTCCATGGCCACATTATAAACAAGTACAGCAACAAGCTACAGAGCAACTTTCGGCATCATGGTTTGAGCCAAATTTAGTGGAAAGTGGGCTAACATGCCATTACATTTGTCAGTGCATAAAACAAAAACCGTCGACACTAATTCAATAACTTTTTGTTAGCATGATCTGAGTCAATTGGTCCAAATCAAATAGAAAAAGTAGGTTTTTAACTTGAGGCTTAAGGTTTAAGGCTTAAGGTTTTTGATGGCATAACTGGAATGGATGTTCTTAGGACAACCCAAGGAATCTATCAATTTTATAATCTAATCAATTTTTTCAAATTTCAATAAGGAAAAAACTGAGCTGGTCTGGTTTGGCAATCCTACCCCTCTGCATTTATTAGGTTTTGGTATGCTACCAATTTATCAAACACCTGTTAGAAACCTTGGGTTTCATTTCAATAGTgatctaaaatttaaaaaaaaaaatacgtaaATTCTATTGTTaaatccaaattttttttttacttacggCA

Function

GO:

id name namespace
GO:0060872 semicircular canal development biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021220-1 Predicted to enable calcium ion binding activity. Acts upstream of or within semicircular canal morphogenesis. Is expressed in several structures, including intermediate cell mass of mesoderm; mesoderm; nervous system; otic vesicle; and pharynx. Orthologous to human NCS1 (neuronal calcium sensor 1).

Ensembl:

ensembl_id ENSDART00000170919

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060570 lncRNA downstream 45024 32342243 ~ 32357002 (-) True XLOC_031187
TCONS_00062031 lncRNA downstream 52314 32342243 ~ 32349712 (-) False XLOC_031187
TCONS_00060555 lncRNA downstream 265667 32135202 ~ 32136359 (-) False XLOC_031179
TCONS_00060553 lncRNA downstream 269796 32129482 ~ 32132230 (-) False XLOC_031178
TCONS_00062032 lncRNA upstream 70836 32516671 ~ 32536749 (-) False XLOC_031193
TCONS_00062033 lncRNA upstream 89761 32535596 ~ 32536732 (-) True XLOC_031193
TCONS_00062034 lncRNA upstream 114745 32560580 ~ 32737158 (-) False XLOC_031194
TCONS_00062035 lncRNA upstream 138621 32584456 ~ 32737156 (-) False XLOC_031194
TCONS_00060580 lncRNA upstream 180175 32626010 ~ 32737091 (-) False XLOC_031194
TCONS_00060572 mRNA downstream 5097 32380026 ~ 32396929 (-) False XLOC_031189
TCONS_00060573 mRNA downstream 18551 32381436 ~ 32383475 (-) False XLOC_031189
TCONS_00060571 mRNA downstream 38654 32360336 ~ 32363372 (-) True XLOC_031188
TCONS_00060567 mRNA downstream 63154 32323775 ~ 32338872 (-) False XLOC_031186
TCONS_00060566 mRNA downstream 63160 32323775 ~ 32338866 (-) False XLOC_031186
TCONS_00060577 mRNA upstream 14618 32460453 ~ 32489796 (-) True XLOC_031191
TCONS_00060578 mRNA upstream 53235 32499070 ~ 32505280 (-) False XLOC_031192
TCONS_00060579 mRNA upstream 54518 32500353 ~ 32505109 (-) True XLOC_031192
TCONS_00060581 mRNA upstream 348051 32793886 ~ 32814417 (-) False XLOC_031196
TCONS_00060582 mRNA upstream 352055 32797890 ~ 32813956 (-) False XLOC_031196
TCONS_00060574 other downstream 5117 32395893 ~ 32396909 (-) True XLOC_031189
TCONS_00060558 other downstream 231740 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060554 other downstream 265605 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060551 other downstream 270589 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060550 other downstream 271510 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060593 other upstream 786029 33231864 ~ 33232766 (-) False XLOC_031204
TCONS_00060608 other upstream 838721 33284556 ~ 33284626 (-) False XLOC_031208
TCONS_00060611 other upstream 839073 33284908 ~ 33284983 (-) True XLOC_031208
TCONS_00060612 other upstream 839691 33285526 ~ 33285597 (-) True XLOC_031209
TCONS_00060613 other upstream 840752 33286587 ~ 33286658 (-) True XLOC_031210

Expression Profile

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