RNA id: TCONS_00060581


Basic Information

Item Value
RNA id TCONS_00060581
length 6264
RNA type mRNA
GC content 0.39
exon number 11
gene id XLOC_031196
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32793886 ~ 32814417 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AactactaaatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgttacacactatatatatttttacaaattccCCTATCTATTTGGAATCGACAATGCAACGTTGTAGCAGCTATTTTTTTCCACATAAATGTACATGGAGATACATgCAGTTTACTTTCGCTGATCAAGTTCAAGGAATATATTTGAGGCGAAACTGCGGGTGAGAGTTGAAGGGTTGTGTTTTCATCACCACAGTAAACATGGCGGAGACAGAACAGGCGTCAGGCTCCTCCCATGAGGATGACAAACCTCCCAGTTCTGTCGGTTTCAACTTCATGGTGCCAAAGAAGGAGATCAGCATGGTGCCTGATATGGGCAAATGGAAAAGATCACAGGCATATGCAGACTACATTGGATTCATTCTGACCCTGAATGAGGGAGTAAAGGGAAAGAAGCTTACATGTGAATACCAGGTGTCTGAGACAGTGGAGAAGTTGCTTGCTTTGTTGGGAACATTAGATCAGTGGATCGATGAGACTCCACCAGTAGACCAGCCTTCTCGCTTCGGCAATAAAGCTTTCCGAACATGGTATGCCAAACTAGACCAGGAGGCAGAGGCTCTGGTTGCAGGAGTTCTGCCAGCTGAGCGTCAGGATGCTGCTCCAGAAATTGCTGTGTACCTCAAAGAGTCTGTGGGCAACTCCACTAGGATTGACTATGGAACAGGTCATGAGGCCGCATTTGCTGCGTTCCTCTGCTGTCTTTGTAAAGTGGGAGCTCTGCGCATGGAGGACCAGCTGGccattatatttaatgtttttgacaAGTATCTGCGAGTGATGCGCAAACTGCAGAAGACGTACAGGATGGAGCCGGCAGGAAGTCAGGGGGTGTGGGGTCTTGACGACTTTCAGTTTCTTCCCTTCATATGGGGAAGCTCACAGCTTATAGACCACCCAACCCTGGAGCCCAGACACTTTGTGGAGGAGAAGGTTGTAAACGAGTACCACCAAGACTACATGTTTCTGGAGTGCATTAAGTTCATCAACGAGATGAAAACAGGCCCTTTTGCCGAGCACTCAAATCAGCTTTGGAACATCAGCGCCGTTCCTTCATGGTCTAAAGTGAATCAGGGCCTCATCCGAATGTATAAAGCAGAATGTCTAGAAAAATTCCCCGTCATCCAGCATTTCAAGTTTGGCAGCCTCCTCTCCATCCAGCCAGTCAAGCCATGAGAAACAACAAAACGAATGCACACCTCTTCAAGAGCACAACAAAGACCCCAACTCTAGACGAAACTGCTTCAATCCCATGTTAACAAACCTTAACATGTGCTCTCTTCACAAGAGGTGAACGATCTTGCTCCTGTAGATCTATTTTCCTAAGGAGTTCAGTTTTTTCAAAGCTGCTCTAATACATACTACCAAAATAAAGTAAGCAAACCTGTTGACCTTGATCATCTGGTTCAGGAGTTTTTAAGCTgaactgaactctgcaggacagtggaTCTCAGAAGCCCTGCTCTTCACAATCTATTAGTTGTGCAaatcaaatcccacttctgataTTCCTCTTAAGTGATGCAATTTGTCTGTAAGGTTTTATTTATCTACCCCCATTCAAGCAGGAATTTGAACTGCTCAGACACCTCCACTGAGCAGtaatgcacatatatatattttcatctggcatttatatttatttatgtgtatataaagAGCAGCTTGTCACAGTGAACGGTTGAAGGCTTGGTTTTGGTTTAATGGGTTTTTATTTCCTGTGTGCAAACGTCTGAAGCCAACAAACAACAATGTGTGTTACGAGAGGTATTTTGGAGCATCATTGTCTTAAAAAGCACTTTTTAAGTAACTTGCTATTCAGTTATCAAAGATTGCTGAGGCGTGTTTGCTGTGAATAGTATTTTTTAAACTGTGTAAGACATTAAGATGTTATCTACCAttgtagttttacatttttttgctctgcttctttctttcatattCCCTTCACTGCAAATAGGACGAGTAATCGATGTGTAAAAAATGTCAAGAAATCACTTCAAGCTAACAGTTTGGTAGCAGCACATGTAGCTAACACCATAGTCTTCCATTGCTAAATCAAAGCAATGAATTGAAATCCGGAAGTTTATTATTATGCTAAATCAGTGAAGCGTATTTGGTTTTTAAAGTTTATTCTGTGTAAATAAATGGGATCTGTCTGCTTCAAAACCACTGGGGtgatcattttaaaagaaagaaaaaaatcaaataactaAAATATGGATGTAAAGCTTTTCAAGTGTTAGAACTGGAGGAAATATTTGTGCATACTTCTACACCGAAACAAATATTGCAATTCACAGAGTATGTTTTGATGGCTTTGCACATTATTGCACACActttagatcagggatgcccaaactagggcccaaaGTTGGCCTGCAGTAAGCAATTAATTTAGCTGTCATCGCCATTTGAGAAGAGAGGAAGAATGATGTTGTCATTTATAATCTTTTGTCTATTTGTTTTAGTGTTAAAATCTAATTGAAATTAAACGTCTCAATTAAAtagtgtaaatgaatcagatttagtttataTGTACACTGTCACCTGACAGGacaaatcaaaacaaagacagattcTGCTTGGCtaatgtattcagcattgaactccactgttatAAATATGAAGGTTTATGTTATTATTGCaataagttttcattttaaatgtcatgttgcattagttaataagagtcatgttttttatttactgttaaatCTTATGACATAGactaggaaattacccatggcaacttaaATGTAATGTAGCTTGGTATAAATACTTTCGGCcacagctctcaatgatatttggcttTTGGCCCTTTATAGAACATTTTGATggatgcaaacaaaaacaatagtcccaatgtatttcctgttttacatttttaatttttgtaacttctgagaatccaaaaaggtccacatattgacaaaggatgttatgatagctgttttaacatgaatTTCAGTTTGAAGTGCCTCTTGTTAAAAGTTATGAAAtggtttgataacaagcaggaaatgttcatgggccagtgacacGACCACAGTAAAATGCTCTATATGAAAAGTTTGTGAAAAGTTAATGGAACCACATTTTGATTCAGAATCTAATCATTTGAAATACGAAGTGGATAAAAATGGCCTTTCAGAATGCTTCCACACTAGCGCTTTTGCACTCTCTGTGTTCACTTGGATCAGGTGAATGATGTTTTCTGAACTTGCACACCTGGGCATGTGGCATTTGCTGGCTAGCCAGATTAGTTTTAGTTTGGTTTTCACCAAGTCTGGGTTTTAGGCACTATGAATGTAGCTCAGCTCAGCTGCTCCATAATTCCTTGGCAGCAAAGAGTGACTAAAGTCAAGGTGCCTTGGTGTTACCTAAAATCCAAGATTGGTGCTTAGTAAACTAAAACTGAACTGGCAAGCCAGCTAATCTAGCTTCATGGTAAAGGTCCCTGAACATTAACCCAAGTAAAAAAGATTATCTAGAAAAACATGTTTGATAAATGCATTATATTCCTGACAAACAGATACACGTGGCGTTCTGTttagttgatttaaaataaagaaaatattctaAATTAGAAGTACAAAAATGAGATGAGCATCCATTCATTTCAATGTCTTCTGCGTAGTGGTTTCCTAGCAACAATTGGCACTCAGTTGATGCAGTCAAACCATGGttctaaattctaaataaaaccaaaaacaacagtgtgaacacatttacacacaattgAACCTGCGTTAACTTAGGACCAAACAATCGACTCAAGAAAGCACAACTATACatttctgttttaaattaaaCAGTCTGAATTAAACTGGGCTGTCCACCAAAATGAAATTACACTTAACCTCAAGcttttctgagtttctttcttttttttttctgattgcaaAAGAAAATTTGAACATTTAAAGAATGTCAGAAACTGCAATGAATATGCATCTATAGTAGGAAGAGAAGTCAATGTTTACTAATTccaaaaattctttaaaaagttttcttttgtgtccatcagaagaaagaaaaaaaaggagattTTGAATAAGTGGTAGATTTATTACAATGtcttttaaagctttttaaatgtataaaactattttaaagacTTTATAGGCCTAAAGAGATTGTAGAAACCACTACAATCTTAATGGTCTCAATGATCTACCTGGGATTACTTAGCTTTTCTAAAATACAGTCCAAGGTGTTAACTGCTATATCAATCCTCATTGACACTAGCAAATCTTGAGTTAACATTGGCAATTTAGCTTGAGGGGTGTATTAAAactggttacagattttcaacaGTCTGTTAATTTCACAAGACTCAATTTTCGAAATAATTTGTCTTAAATTTGGCTTTTTGGGGGATTTAGTATACTAATAATAGGCCATGGCACTGATAATTATCTGCTTTCTAACCTCCACAATTAGTTTAATCACTAATATTGTGACTCTTGTACATGCAAGATCAACAATTTGTGAATTAGGTAACAGTATagttaacaaatatttaaagtttCAGCATTGTCCTGTTTTTGTGAAAAATTATCCTCAACTAAAGGGTTTCATCACTGAAATAATTTAGGCAAACTATGGAATTATTAGTATAGGTTTTTACAATCATTTTATCTACAttttaacttaaaaatgtaatgGTTTGTAAAACAGGCAATCCTatagttttatttcaaaaacCATGGTGCTTTAATATTGATTTAAtcagtaatttaaatataaaatttttacatACAATAAAGATGAAGCAAAGTATATAGCCTATGTGGCTTCTTTTTTTGACATTTGCACAGGCTAGCCACAAGACCTACACTCAGTCCAGGCCAATTCCCTTTGTCTATTTTCAGTTGAGTCACTTTCTGTGGCTGGCAAATCCAGCATCTGCCCAGTCACTGTAGTTTGGCCGCCCCACTGTGAGACTCGGCTCTGCTTGCTGAGTAATTGACATGAACGCATGTCGAATTCACCCCCAACACCCATCTGCCTCCCCCGTCCCCATTCAGCTGTATTCAGACGCGGGCTCCACTGCTGAGTTCAACAGGCGCAGTCGAGATAAGACAAGATTAAAGTCGTGCCTTTTGTCTTCATTAACATTTGATGTTACCTCTGAGCCGGTTTCACCAGGCTGCTCATTTTGGAAAAGTACAAACACAGGCGCGTTTAGTATATATATCACGTCCAGCAACTAACGAAACACGTGCTATCTGTGTTGAATGTTGTGTGCGTGTATAATCGTAAGCGCACGGGTCCTTCTTCCTTCTCGTAAAACGAAAAAATCTGCATTGGTTCCGTGCGCGCGCTCGACATGGTAGCGTTTCCCGTGCTCGCCACGCGGAGGAGCTCGCCACACACCACAGACCGAGTAAGCGCTACATCTCCTgtcaaaattaagcaaatataaCAACAGgctttttattaaacacatttgttAGCGTTAGCATTGGCGCATTTCCCTAAAGCAACCTATTAAGAACAAAACAAACGAGTTTAAGTAGAACTCATCATATAAAACCGACGAGAATAAAGCCATGCTGAATCTTTCAGTTGTTTCACAATAATGTCCGTCGCTCTCCAAAAAACAAGCTTAATACATAAATTTTACAACACTGAGAATTGTAAACGCATTATAATGTAGCACATAAACAAACCCCGCGACCGAATTACCTGCGATTCTAAGCGAAACGTAAATACGCGCGACGCGGCTATTCTCGTCGAAAATAGCCAACACAACGAGCTGATAACAGCCACTGTATGATGAGGTTGATGTGTCGGGTGTACTGCGGTATCTCAGATTGAGAGGAGTCGAGAGGTTTCGGCTggagatgagagagagagagagaccggaGAGAGGACAGGGAGGGGAGGGTGGAGGGGGTTGCAGGGAGCAGCGGATTCGAGGTCAGCCCGAGGTGCCGCTACATAGGCGCTCTAATAccttcattcattgattttgaaGAACACCACCATGTGGCATACAGCAGAGATAACACAGCCTGCAAGTTTACTGAGAGTTTCTGGCTAAAAAAGTGCGCGCGCCTTGAACACAGTGCCCGCCACCAGAATGTGACGCGTGCGTCAGGTAAAAGTTACAGCTCGTTTTCAATGTTGGATTTGAGTGTATTACTTTGCTTTATTCTCTTTGA

Function

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008160 protein tyrosine phosphatase activator activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0019211 phosphatase activator activity molecular_function

KEGG:

id description
ko05415 Diabetic cardiomyopathy
ko04931 Insulin resistance
ko01009 Protein phosphatases and associated proteins
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040801-11 Predicted to enable peptidyl-prolyl cis-trans isomerase activity and protein tyrosine phosphatase activator activity. Predicted to be involved in mitotic spindle organization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PTPA (protein phosphatase 2 phosphatase activator).

Ensembl:

ensembl_id ENSDART00000188900

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062038 lncRNA downstream 9086 32782667 ~ 32784800 (-) True XLOC_031195
TCONS_00062034 lncRNA downstream 56728 32560580 ~ 32737158 (-) False XLOC_031194
TCONS_00062035 lncRNA downstream 56730 32584456 ~ 32737156 (-) False XLOC_031194
TCONS_00062036 lncRNA downstream 56730 32627114 ~ 32737156 (-) False XLOC_031194
TCONS_00062037 lncRNA downstream 56730 32679267 ~ 32737156 (-) True XLOC_031194
TCONS_00062039 lncRNA upstream 70762 32885179 ~ 32885874 (-) True XLOC_031198
TCONS_00062040 lncRNA upstream 108239 32922656 ~ 32923569 (-) False XLOC_031200
TCONS_00062041 lncRNA upstream 108239 32922656 ~ 32927919 (-) True XLOC_031200
TCONS_00060599 lncRNA upstream 455019 33269436 ~ 33274415 (-) False XLOC_031207
TCONS_00060607 lncRNA upstream 470086 33284503 ~ 33287573 (-) False XLOC_031208
TCONS_00060578 mRNA downstream 288606 32499070 ~ 32505280 (-) False XLOC_031192
TCONS_00060579 mRNA downstream 288777 32500353 ~ 32505109 (-) True XLOC_031192
TCONS_00060577 mRNA downstream 304090 32460453 ~ 32489796 (-) True XLOC_031191
TCONS_00060575 mRNA downstream 348051 32402026 ~ 32445835 (-) False XLOC_031190
TCONS_00060576 mRNA downstream 369484 32402887 ~ 32424402 (-) True XLOC_031190
TCONS_00060584 mRNA upstream 50947 32865364 ~ 32882162 (-) True XLOC_031197
TCONS_00060585 mRNA upstream 73702 32888119 ~ 32890807 (-) True XLOC_031199
TCONS_00060586 mRNA upstream 204347 33018764 ~ 33022014 (-) True XLOC_031201
TCONS_00060587 mRNA upstream 213666 33028083 ~ 33039670 (-) False XLOC_031202
TCONS_00060588 mRNA upstream 215191 33029608 ~ 33035295 (-) True XLOC_031202
TCONS_00060574 other downstream 396977 32395893 ~ 32396909 (-) True XLOC_031189
TCONS_00060558 other downstream 623600 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060554 other downstream 657465 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060551 other downstream 662449 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060550 other downstream 663370 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060593 other upstream 417447 33231864 ~ 33232766 (-) False XLOC_031204
TCONS_00060608 other upstream 470139 33284556 ~ 33284626 (-) False XLOC_031208
TCONS_00060611 other upstream 470491 33284908 ~ 33284983 (-) True XLOC_031208
TCONS_00060612 other upstream 471109 33285526 ~ 33285597 (-) True XLOC_031209
TCONS_00060613 other upstream 472170 33286587 ~ 33286658 (-) True XLOC_031210

Expression Profile

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