RNA id: TCONS_00060587


Basic Information

Item Value
RNA id TCONS_00060587
length 3435
RNA type mRNA
GC content 0.40
exon number 13
gene id XLOC_031202
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33028083 ~ 33039670 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAATTTGCGAttatgagtgtatatgtgtgtgtgtttgtgtgcgtgtctgtttaGAAGGAAACCAAGCATgaaaatgcgtgtgtgtgtgtgtgtgtgtgtttgtgtagtagGCTACCATCAGAATGCACTTCCCTGGTCTAGAGGGCGTTGCATCACTTGACAGATATATAGTACGGAGATTTAATGTGCAAGACAGAGTTGGCAGACAGCGCTTAAAGAAAGACAAATTCCTGCCTTTGAGCAACCAACAGAACagTTTCTCACGTAACTACATGCATGGCGGGCAGCAGTTTTGAGGCCGAGTTCCTACAGGTGCACAATGCCTACCGCAAACAGCACGGAGCTCCGCCCCTCACCTTTAACAAAAACCTGTGCCGCTCCGCACAGCAGTGGGCGGAGCATCTGCTTTCAACCAAAACACTCGCACACAGCAACAAGGGCTACGGAGAAAATTTGTATTATGCTTGGAGTTCAGCTAACAAAAAACTCACAGGACATGAGGCAGTGGACAGCTGGTACGGTGAAATTAAAGACTACAACTTCAGTAGGCCAGGATTTAGCTCCAAAACAGGTCACTTCACACAGGTGGTGTGGAAGGACACAAAAGAGTTGGGAGTTGGACTGGCCACTGATGGGAACACAATTTTTGTCGTGGGTCAGTACCTTCCCGCTGGAAACATCGCAAATGCaggttattttgaaaaaaatgtcctGCCGACTGGCTCTAAACTAGATCAAAAGTCCACTGGTGCAACTCACAAAGTGGAACAAGCTCATGGTTCATCAGGCATTCATTCAAACAAAGTGCCCTCAGTGCCTCACATTGCTGAAAAACCAACACCAGAGGGCAAAGCAGAAAGCAGTTTTGAGGCAGAGTTCTTGCAGACCCACAATGCATATCGAAAACATCATGGAGCTCCACCCCTTACCATAAACATAAACCTGAGCCGCTCTGCACAAAAGTGGGCAGAGCATCTGCTGTCAATCAGGACTCTCATGCACAGCAACGGAGACCATGGAGAAAATGTGTATTATGCTTATAACTCGGCTAACAAAAAACTCACAGGACGTGAGGCAGTGGAAAGCTGGTACAATGAAATTAAAGAGTACAACTTCAGCAGGCCTGGATTCTCCTCTAAAACAGGTCACTTCACACAGGTGGTGTGGAAGGACTCAAAAGAGTTGGGAGTTGGACTAGCCACTGATGGAAGCACAAGTTTTGTGGTGGGACAGTACCTTCCAGGAGGTAACATCACAAATGCAGGTTATTTTGAGAGAAATGTCCTACCGGGGGGATCCAAAGTAGACCTCAAAGCCACCCCACCTGTGGACAAAGTTGGACAAGCTCGTGGTGCCCTTAGCATTACGTCCAACCTGTTGCCTTCATCATCTCACAGTGTTGGACCAGCACCACCGAAGACTCATTCTCCACAGAGCAGCCACTCAGAGAGTGAGAGCTTGTTCCAGTTTCGTCAGTCTCTCCTTAAAGCTGTAAATGATTACAGACGACAACATGGGGCAAAACCTCTCTCTCTGTGCCCTGTCCTCAGTAAAGAGGCTCAGGATTGGGCAGCACATCTAGCCAGCATTGGTGCCCTACAGAACAGCAGAAAAGGTTACGGAGAGACTTTGTCTTACAAATGGACATCCAGTATGGTTCCTCCAACAGGAAAAGAGGTTGCTGAAAACTGGTACAAGGATAATGTGAAGTACAACTTTGCCATTCCTGGATTTCAGAAAGGAACTGGTAACTTTACCCAGATGATCTGGAGGTCTTCAGAGCAAGTTGGTGTTGGTTTGGGATCAGATGGAAAGGGCATGTTCATTACTGTGGCCTTCTACAACCCTTCTGGAAACATCACCAACCCTGGCTTCTTCCAGGATAATGTCAGACCTTCTGGGAGGTGACCTGCTGAATAAGAAAGATTAAGAAAATTTTGCATCTTGTTTTACTTGCtagtttataaattttttaaaggcATTTATCTCAGGTTTAGTGTTTGCATAGTTACTGCACTTTGCCTTTGTAGGGGAGAATATGGCAATATATTCATACAGTATGTTTGTCATCTAAATATATATCATAAACATAAACATCAGTTCACAAATTTTAGCTGCACCGTTGAATGTAGATGCTTTTTTAAAGGTTCTGGTGTAgataaatgaatattatttgcTTAGGTGGTTTTCTTTCCTTTACCCTAATAAGCAATCGCATGCACCTGCTATAGATTTGCATGATTGGTTTTAATGAGAAGTGACTTCAAATGTATAGAAAGATGAGGTGATAAATCATAATGAAACATTAAAATGGATTTTGCatattatatatgtttaaatatgttgctttaataaaaatgtttgtaaaattcAAGTAATTTCTGCAGTTTGACAGATATTAAACACTGAAACTTTTCACTAAACAGTGCTAATAGAGACTATAAGCAAAAGGGaagataaattatattttaaagaatctgTGTTACTGTACAACAAACCTGAAAATAGGAATCAAGggagaaaaaacaagatttttaaaGCATTTCCCTAAATTATCATGAAATATATTGTAAATTCAATCTGTAAAGCAGTATGAAAATGAAGAATGGATAAATGCACAGAACATCTTGTCAGtacaaaaaaaactttgagaTATGTTGCTGCTGAAAGTTATTTAACCTCTTTCCTACACAGAGAGACTTGTACTTTGACttctcatttaataatttttatcctGTAAAGACTGTATATTCTGTCTCCCTTCCCAAAACCTCAcataaaacattgtacattttattttaatctgtttGATTTATTAGCTGttttcctaaaaaacaaacaaacctatATGTGATGAATACAAAGTATCCCCtgccacacacatgcacacagacccTCATAGATTGCATTCTTATACGCAAATGTTTATCAACATATGCATCTAGATGTGCACATCTATCTTGCACAGCACCATAGAGCTTGGGTGGGAATGCGAAATTGAATTGACAAGGTGTCATGTTGCATAAGCCTCTCAGCACATTGTGTTGCTGGAGACACATGAGATGCTCTGATCTTCATTTATACATGCCCTCTTTCACGAATACACAGGCTGAATAAAACAAAGGTCAAACACTTGATCAGCTAAAATCCACAGACCTTTACTGTGGTGGGGGTCTAGTTTCACattggaaaaaaaggaaaaaccttattgaaatgtaaatattactTTATCAATAATAGTCTTtagaataaaacatttcaaacaaaACACATGAATGCTGCATTATAAAACAGGAATATGCACAATATTGAACAGCATTCAAGGCTTTTTCAGACTTATGCATTTGTTAATACAATTCTACTTGAATGGATGTGTTTTGTCTGGTTaaactgaaattttttttaaataaaataaaaattcagtgtATTATAA

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-030131-4424 Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in blood cell and vascular endothelium. Orthologous to human GLIPR2 (GLI pathogenesis related 2).

Ensembl:

ensembl_id ENSDART00000141361

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062041 lncRNA downstream 100164 32922656 ~ 32927919 (-) True XLOC_031200
TCONS_00062040 lncRNA downstream 104514 32922656 ~ 32923569 (-) False XLOC_031200
TCONS_00062039 lncRNA downstream 142209 32885179 ~ 32885874 (-) True XLOC_031198
TCONS_00062038 lncRNA downstream 243283 32782667 ~ 32784800 (-) True XLOC_031195
TCONS_00062037 lncRNA downstream 290927 32679267 ~ 32737156 (-) True XLOC_031194
TCONS_00060599 lncRNA upstream 229766 33269436 ~ 33274415 (-) False XLOC_031207
TCONS_00060607 lncRNA upstream 244833 33284503 ~ 33287573 (-) False XLOC_031208
TCONS_00060609 lncRNA upstream 245051 33284721 ~ 33287561 (-) False XLOC_031208
TCONS_00060610 lncRNA upstream 245139 33284809 ~ 33287584 (-) False XLOC_031208
TCONS_00062042 lncRNA upstream 2162896 35202566 ~ 35206296 (-) True XLOC_031225
TCONS_00060586 mRNA downstream 6069 33018764 ~ 33022014 (-) True XLOC_031201
TCONS_00060585 mRNA downstream 137276 32888119 ~ 32890807 (-) True XLOC_031199
TCONS_00060584 mRNA downstream 145921 32865364 ~ 32882162 (-) True XLOC_031197
TCONS_00060581 mRNA downstream 213666 32793886 ~ 32814417 (-) False XLOC_031196
TCONS_00060589 mRNA upstream 160328 33199998 ~ 33215261 (-) False XLOC_031203
TCONS_00060590 mRNA upstream 160682 33200352 ~ 33215389 (-) True XLOC_031203
TCONS_00060591 mRNA upstream 182454 33222124 ~ 33230794 (-) False XLOC_031204
TCONS_00060592 mRNA upstream 182454 33222124 ~ 33236637 (-) False XLOC_031204
TCONS_00060594 mRNA upstream 192531 33232201 ~ 33236637 (-) True XLOC_031204
TCONS_00060574 other downstream 631174 32395893 ~ 32396909 (-) True XLOC_031189
TCONS_00060558 other downstream 857797 32170170 ~ 32170286 (-) True XLOC_031181
TCONS_00060554 other downstream 891662 32135202 ~ 32136421 (-) True XLOC_031179
TCONS_00060551 other downstream 896646 32129563 ~ 32131437 (-) True XLOC_031178
TCONS_00060550 other downstream 897567 32129482 ~ 32130516 (-) False XLOC_031178
TCONS_00060593 other upstream 192194 33231864 ~ 33232766 (-) False XLOC_031204
TCONS_00060608 other upstream 244886 33284556 ~ 33284626 (-) False XLOC_031208
TCONS_00060611 other upstream 245238 33284908 ~ 33284983 (-) True XLOC_031208
TCONS_00060612 other upstream 245856 33285526 ~ 33285597 (-) True XLOC_031209
TCONS_00060613 other upstream 246917 33286587 ~ 33286658 (-) True XLOC_031210

Expression Profile

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