RNA id: TCONS_00060620


Basic Information

Item Value
RNA id TCONS_00060620
length 3459
RNA type mRNA
GC content 0.54
exon number 16
gene id XLOC_031214
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33679559 ~ 33886495 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAGTCTGAGACGAGCCCTGAGTCGGAGGGTCAGTCCGACTCTCCACCTGAGAGAACAGGGCGGAGACGTAGCATACCGGGCTCCGCCCCTGACAAAGTCCCACCTACAATGGAGCCCACAGCCGCCGCTGCTGCAACACCCTTCAGAGTCACTGGTTTTTTGAGTCGGAGGTTAAAAGGCTCAATCAAGCGGACTAAGAGTCAGCCTAAACTGGATAGGAACAGCAGTTTCAGACACATCCTGCCAGGCTTCAGACCAGTGGACAACGAGAGGTCTCATCTGATGCCCAGGCTGAAGGAGTCACGCTCTCACGAGTCTTTGCTCAGTCCCACCAGTGCAGTCGAAGCTCTGGACCTCAGCATGGAGGAAGAGGTCCTCATTAAACCAGTGCACAGCTCCATCCTTGGCCAGGATTACTGCTTTGAGGTGAGCACCTCCACAGGTAGTAAGTGCTTTTCTTGCCGTTCAGCCGCAGAGAGAGACAAATGGATGGAGAACCTGCGACGAGCCATCCACCCTAATAAGGACAACAGTCGGCGGGTCGAAAATATGCTCCGTCTGTGGATCATCGAAGCAAAGGACCTTCCGGCCAAGAAAAAGTACTTCTGCGAGCTGTGCCTGGACGACAGCCTATATGCCCGCACAACCTGCAAGATGAAGACGGATAACGTGTTCTGGGGTGAACACTTCGAGTTCAATAACCTCCCTGCGGTCCAGAGCATCACCGTCCATGTCTACAGGGACTCggacaagaagaagaaaaaagacaaaaacaactaCGTGGGGCTGGTGAGCATCCCGGTGGTGACCGTCACGAGCAGGCAGCTGGTGGAGAAGTGGTACCCTGTTAGTCAGCCCAATCCTGGGAAAGGGAAAGCGGCTGGTCCCATGGTCCGCATCAAGGCCCGGTACCAGAGCATGAACATCCTGCCTATGGAGCTGTACAAGGAGTTTGCAGAGTACACCACAAACAACTACATGCTGCTCTGCTCGGTGCTGGAGCCGGTCATCAGCGTCAAGAATAAAGAGGAGATGGCCTGTGCTCTGGTGCACATCCTGCAGAGCACCGGCAAAGCCAAGGACTTCCTGACAGATCTGATGATGTCAGAGGTGGATCGATGCGGAGAGAACGAGCACCTGATATTCAGAGAAAACACACTGGGCACTAAAGCCATCGAGGAGTATCTCAAACTGGTCGGACAGAAATATCTGCAGGACGCGCTGGgtGAGTTTATAAAGGCTCTGTATGAGTCTGATGAGAACTGTGAAGTGGACCCGTCCAAATGTTCATCTAGTGATCTGCCCGAGCATCAGAGCAACCTCAGGATGTGCTGCGAACTGGCCTTCTGCAAGATCATTGAGTCTTACCGTGTGTTTCCTCGGGAACTCAAGGAGGTGTTTGCGTCGTGGAGGCAGGAATGTGGTAATCGAGGGCGTCCAGATATCAGCGAGCGTCTTATCAGCGCCTCCCTGTTTCTGCGTTTTCTGTGTCCGGCCATCATGTCTCCGTCTCTCTTCAACCTGACGCAGGAATATCCAGACGACCGCACTGCACGCACACTCACTCTTATCGCAAAGGTCACGCAGAACCTGGCAAATTTCACCAAGTTTGGTAATAAGGAGGAGTACATGTCCTTCATGAATCAGTTTTTGGAGCAGGAGTGGACCAACATGCAGCGCTTTCTGCTGGAGATCTCCAACCCCGAGACCATCTCTAATACTGCAGGCTTCGAGGGCTACATTGACCTGGGTCGCGAGCTCTCCACATTACACTCACTGCTAGCTGAAGTGCTGTCCCAAATGGACCAGAGTGCTGCCTCCAAGCTTGGCCCATTACCGAGAATATTGAGGGACGTCCATGGAGCGTTAACAAACCCGACGAATGTACAGATGAGCGTTCCTTCTGACCGAGTGCCCTCGCCACCAGTCCCTGGATGCAGCATCTCCACTGGAATACAAAAGATGGCCATTGACAGCGACCTGCCAGGCCCAGTGGACTTTACTCGCCTTCCTTCCCCCACCCCTGAAAACAAAGACCTCTTCTTCGTTACACGCTCTTCTGGCCTCCAGGGCTCCCCTACCCGCAGCTCCAGCTACTCTGAGGCCAATGAACCCGAGCTGGGTCTGGCCAACGGTGGCAAGAGTCTGTCCATGGTAGACCTCCAGGAAGCAGCCAGAGCGTTAGAACCCATTTCCATTCCGGCAGGGATAACTTCAGAAGGTATGGGTGAGGGTGCCATGGTCCCCTGGAATGCACGGACTCCTCAAGGCAACATTGCTGGAGGCCCGACTCTTCACAGGCCAGTACAGAGTCCCACTACCCCAGGAGCAGAAGGGGCCCCAGGCAGGCCCACGCAGCTCTTGGCCCCACTATCTTTCCAGAATCCAGTGTACCAGATGGCAGCAGGGTTGCCAGTCTCCGCTAGGGGTAATGCGAGTGGGGATTCTGGGTCGGAGTGTCACAGTTCCGTCAGTTCCCATAGCAACAATGAAGAGTGTCTTGGAGGAACCAAGACCACCTTCCTTACCCAGGGTGCTTCAGTGGGCGAAGAGTTTGCAAGGCGTTCGGGAGATTTTTCGAGACGCCAGCTATCGTTAACCGACCCGCAGCAtggaaaccagccaacagtaccACGACAGAGCAGTGCTGGCCCCCAGCGGCGGATTGACCAGCCTCCACCACCTACACAGACTGCACCCAGAGGACGAACTCCACCCAACCTTTTAAACTCCGGCCCCTACCCACGACCTCTCAACAACACTATGATGTCATCATCACCAGACTGGCCTGGAAGTGGTGCACGGCTTCGGCAGCAGAGCTCCTCTTCCAAAGGGGACAGTCCAGAAACAAAGCATCGTGCACCACATAAACAAGCCCCGTCCCCAGTGAACCCCAGTGCACTGGACCGTACGGCTGCCTGGTTGATGAATGTGCCATATATAGAGCAGGAGCCTGAGACAGAGCTTTGCAGAGATGAGCACACACAAGCTGAAAAGTATCAGGCGGAAATCAGCATGTTGCAGGATCGTCTGCGTATGTCGGTGCAGAGGCTGGAGGAGTACGAGGCCCGGCTGAAGGGACAGGAGGAACAGGCCCAGAAGATGCTGCTGGAGTATCAGGCCCGACTGGACGAGTCAGAGGAGAGACTGAGACGACAACAAGAAGACAAAGATCTGCAGATGAAGGGCATCATAAGCAGGTTGATGTCGGTGGAGGAAGAGCTGAAGAAGGATCATGCTGATATGCAGGCAGTTGTTGACTCCAAACAGAAGATCATTGATGCACAGGAGAAACGGATAGCCTCTCTAGACGCAGCTAACGCTAGGCTAATGAGTGCTCTGTCCCAACTGAAGGAGCGCTACAGCATGCAGACACGTAACGGCATCTCTCCCACAAACCCCACCAAACTGCAGATAACAGAGAACGGAGAGTTCCGCAACAGCTCCAACTGCTGA

Function

GO:

id name namespace
GO:0038026 reelin-mediated signaling pathway biological_process
GO:0030948 negative regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0016525 negative regulation of angiogenesis biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2449 Predicted to enable GTPase activator activity. Predicted to act upstream of or within several processes, including negative regulation of angiogenesis; negative regulation of vascular endothelial growth factor receptor signaling pathway; and reelin-mediated signaling pathway. Orthologous to human DAB2IP (DAB2 interacting protein).

Ensembl:

ensembl_id ENSDART00000159058

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060610 lncRNA downstream 392561 33284809 ~ 33287584 (-) False XLOC_031208
TCONS_00060607 lncRNA downstream 392572 33284503 ~ 33287573 (-) False XLOC_031208
TCONS_00060609 lncRNA downstream 392584 33284721 ~ 33287561 (-) False XLOC_031208
TCONS_00060599 lncRNA downstream 405730 33269436 ~ 33274415 (-) False XLOC_031207
TCONS_00062041 lncRNA downstream 752226 32922656 ~ 32927919 (-) True XLOC_031200
TCONS_00062042 lncRNA upstream 1316071 35202566 ~ 35206296 (-) True XLOC_031225
TCONS_00060651 lncRNA upstream 1636914 35523409 ~ 35540980 (-) False XLOC_031229
TCONS_00060652 lncRNA upstream 1640262 35526757 ~ 35540895 (-) True XLOC_031229
TCONS_00060655 lncRNA upstream 1839052 35725547 ~ 35728227 (-) True XLOC_031230
TCONS_00062043 lncRNA upstream 2935379 36821874 ~ 36829073 (-) True XLOC_031238
TCONS_00060616 mRNA downstream 73083 33537789 ~ 33607062 (-) False XLOC_031213
TCONS_00060617 mRNA downstream 73416 33573334 ~ 33606729 (-) True XLOC_031213
TCONS_00060615 mRNA downstream 219186 33356425 ~ 33460959 (-) True XLOC_031212
TCONS_00060614 mRNA downstream 381793 33295678 ~ 33298352 (-) True XLOC_031211
TCONS_00060605 mRNA downstream 392454 33284144 ~ 33287691 (-) False XLOC_031208
TCONS_00060624 mRNA upstream 53720 33940215 ~ 33959868 (-) True XLOC_031216
TCONS_00060625 mRNA upstream 180096 34066591 ~ 34185115 (-) False XLOC_031217
TCONS_00060626 mRNA upstream 180096 34066591 ~ 34185497 (-) False XLOC_031217
TCONS_00060629 mRNA upstream 714219 34600714 ~ 34616599 (-) False XLOC_031219
TCONS_00060630 mRNA upstream 714435 34600930 ~ 34609337 (-) False XLOC_031219
TCONS_00060613 other downstream 393487 33286587 ~ 33286658 (-) True XLOC_031210
TCONS_00060612 other downstream 394548 33285526 ~ 33285597 (-) True XLOC_031209
TCONS_00060611 other downstream 395162 33284908 ~ 33284983 (-) True XLOC_031208
TCONS_00060608 other downstream 395519 33284556 ~ 33284626 (-) False XLOC_031208
TCONS_00060593 other downstream 447379 33231864 ~ 33232766 (-) False XLOC_031204
TCONS_00060627 other upstream 256098 34142593 ~ 34150122 (-) True XLOC_031217
TCONS_00060628 other upstream 351412 34237907 ~ 34238023 (-) True XLOC_031218
TCONS_00060631 other upstream 717319 34603814 ~ 34615966 (-) False XLOC_031219
TCONS_00060636 other upstream 947483 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060637 other upstream 1032496 34918991 ~ 34964787 (-) True XLOC_031220

Expression Profile

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