RNA id: TCONS_00060679


Basic Information

Item Value
RNA id TCONS_00060679
length 1713
RNA type mRNA
GC content 0.50
exon number 16
gene id XLOC_031246
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37132016 ~ 37264495 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTACAGAGAACACTTGGCGATAAACGACTGTGGTGGAGGCAGTCGTGGTTCGGCGGTTCGGGGAATCTCATTGGCAACCGGAGTGACTAGCCAGCCTTACCCGAACGTTGCCCACTGGAACCCGGGCCACCCGCTTCACACCGCCCGCAGCCTGGAGCGCGCGCTGGAGGATGCCGTCTGCTCCGGGATGCTCAACATCAGCGGGAGGAAACTGCGCGACTACCCGGGGCTCAACTACGATCTGACCGACACTACACTAGCAGACTTGTCGAAAAACCGTTTTTGTGAAATTCCCCCAGAAGTTTGTATGTTTGCACCACTGGAGTCATTAAACCTCTACCACAACTGCATAAAGACCATTCCAGAGGCCATTGTCAACCTACAGATGCTCACTTACTTGAACATCAgTCGAAATCAGCTATCTGTTCTCCCCAAGTTTCTCTTCAATCTTCCTCTGAAAGTGCTGGTGGTCAGCAACAATAAACTCCCTTCTGTTCCTGAGGAGATCGGAAAGGCCAAAGACCTCATGGAACTGGACATCAGCTGTAATGAGATCCAGGTGCTTCCTGCTCAGATGGGGAAACTCCTCGCGTTACGAGAGCTTAACATACGGAGAAACTGTCTACAAGTGTTACCAGATGAACTGTCCGATCTGCCATTGATCAGGCTGGATTTCTCTTGTAATAAGATCACAGAGATTCCCATTTCTTACCGCAAACTCAAGCAGTTACAGCACATCGCACTCGACAACAACCCCATGCAGTCTCCTCCTGCTCAGATCTGCCTGAAGGGAAAGATCCACATCTTCAAGTATCTGAACCTGCAGGCATGTCGTCTGGATAAAAAGCCTGACACACTTGACCTGCCTTCTCTGGGAAAACGCTGTTTACCTCAGCAGCTGACTGACAGtaTGGAAGATTTCTATCCTAGTAAAAACCACGGCCCTGACTCAGGTATTGGCAGTGACAATGGTGACAAAAGACTGTCGACTACAgagCCATCTGATGATGACACCATGAGTCTCCACTCTCAAGTGTCAGAAACGGCACGGGCTGACGCACACATTCTGCTCACAAAGCTTGACTCAAACAAAGTATTAAGCAATGTTGTATTTTGTCTGTCTTTTTTCCACTTTAGCTCGGAGAAAGAGCAGTTAGCTGAAGAAGAGGAGGATGACCTGAAGGAAGTGTTGGATCTGAGGAAGATCGCAGTGCAGCTGCTCCAACAAGAGCAACAGAACAGATTGTGTGTTTTTTACTCAGCCTTCTCCCGTGGAAACCGTCAAGACTTCAGCTCCACAGACCCAAGCTTCACCATGAGGAGGAAGATGGAGCACCTTAGGGAGGAGATGGAGCAGATCAAACTTTTGCGGCAGaacCTCGAGTCAAGGTTAAAGGTTTTATTGCCAGATGACGTGGGCGCTGCGCTGATGGATGGTGTCGTTTTATGCCATCTAGCCAATCACATTCGTCCCCGTTCGGTCGCCAGTATTCATGTACCCTCCCCTGCCGTGCCAAAGCTAAGTATGGCCAAATGTCGGCGCAATGTGGAGAATTTCTTGGATGCTTGTAAAAAGCTTGGAGTGCCACAGGACCAGTTGTGTTTGCCACATCACATTCTGGAGGAGCGAGGTCTGGTAAAAGTCGGCGTCACCGTTCAGGCTCTGCTAGATCTTCCGTCATCGAAACCCAATCAACTTTCCACCATGTAG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-080114-1 Orthologous to human LRCH2 (leucine rich repeats and calponin homology domain containing 2).

Ensembl:

ensembl_id ENSDART00000185110

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060669 lncRNA downstream 188041 36934568 ~ 36943975 (-) True XLOC_031242
TCONS_00062044 lncRNA downstream 224637 36903146 ~ 36907379 (-) True XLOC_031240
TCONS_00062043 lncRNA downstream 302943 36821874 ~ 36829073 (-) True XLOC_031238
TCONS_00060655 lncRNA downstream 1403789 35725547 ~ 35728227 (-) True XLOC_031230
TCONS_00060652 lncRNA downstream 1591121 35526757 ~ 35540895 (-) True XLOC_031229
TCONS_00062046 lncRNA upstream 14833 37266944 ~ 37272311 (-) False XLOC_031247
TCONS_00062047 lncRNA upstream 228336 37480447 ~ 37482727 (-) False XLOC_031249
TCONS_00062048 lncRNA upstream 228336 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00061540 lncRNA upstream 340165 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062049 lncRNA upstream 456591 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00060675 mRNA downstream 14238 37101393 ~ 37117778 (-) False XLOC_031245
TCONS_00060677 mRNA downstream 15751 37102062 ~ 37116265 (-) True XLOC_031245
TCONS_00060676 mRNA downstream 28529 37102037 ~ 37103487 (-) False XLOC_031245
TCONS_00060674 mRNA downstream 84850 37045674 ~ 37047166 (-) True XLOC_031244
TCONS_00060672 mRNA downstream 84869 37040853 ~ 37047147 (-) False XLOC_031244
TCONS_00060683 mRNA upstream 64572 37316683 ~ 37341044 (-) True XLOC_031248
TCONS_00060684 mRNA upstream 565759 37817870 ~ 37820878 (-) True XLOC_031252
TCONS_00060685 mRNA upstream 612594 37864705 ~ 37881345 (-) False XLOC_031253
TCONS_00060686 mRNA upstream 615023 37867134 ~ 37875636 (-) False XLOC_031253
TCONS_00060687 mRNA upstream 617798 37869909 ~ 37871526 (-) True XLOC_031253
TCONS_00060656 other downstream 1308468 35823418 ~ 35823548 (-) True XLOC_031231
TCONS_00060637 other downstream 2167229 34918991 ~ 34964787 (-) True XLOC_031220
TCONS_00060636 other downstream 2297923 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060631 other downstream 2516050 34603814 ~ 34615966 (-) False XLOC_031219
TCONS_00060628 other downstream 2893993 34237907 ~ 34238023 (-) True XLOC_031218
TCONS_00060682 other upstream 15136 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060692 other upstream 638496 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060699 other upstream 696743 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other upstream 701225 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060704 other upstream 783226 38035337 ~ 38038217 (-) True XLOC_031259

Expression Profile

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