RNA id: TCONS_00060682


Basic Information

Item Value
RNA id TCONS_00060682
length 258
RNA type processed_transcript
GC content 0.45
exon number 3
gene id XLOC_031247
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37266944 ~ 37272311 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tggagagagaaagggagaagagggagactcacaagagcatcaatGGAGATATACTTTAAGACCTGGAGCTCAGGAAGCAGattgGTATGGAGCAGGTGGAGAAACAGGGAAACACACGTCAGTAATGACAAGTGTATCATAATAAATTAGagtgGAGTGAAGAATCTAGGGAATCGCACATCTCAGCAATGATAAGACTCTGATGGTCAGGTATCACCTATTGACGTCAGATGTCCAAGaagaagggggtggtggtgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000171373

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062045 lncRNA downstream 2752 37249544 ~ 37264495 (-) True XLOC_031246
TCONS_00060669 lncRNA downstream 323272 36934568 ~ 36943975 (-) True XLOC_031242
TCONS_00062044 lncRNA downstream 359868 36903146 ~ 36907379 (-) True XLOC_031240
TCONS_00062043 lncRNA downstream 438174 36821874 ~ 36829073 (-) True XLOC_031238
TCONS_00060655 lncRNA downstream 1539020 35725547 ~ 35728227 (-) True XLOC_031230
TCONS_00062047 lncRNA upstream 212248 37480447 ~ 37482727 (-) False XLOC_031249
TCONS_00062048 lncRNA upstream 212248 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00061540 lncRNA upstream 324077 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062049 lncRNA upstream 440503 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061541 lncRNA upstream 622578 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00060679 mRNA downstream 15136 37132016 ~ 37252111 (-) False XLOC_031246
TCONS_00060678 mRNA downstream 19593 37132016 ~ 37247654 (-) False XLOC_031246
TCONS_00060681 mRNA downstream 57766 37189421 ~ 37209481 (-) False XLOC_031246
TCONS_00060680 mRNA downstream 109737 37132020 ~ 37157510 (-) False XLOC_031246
TCONS_00060675 mRNA downstream 149469 37101393 ~ 37117778 (-) False XLOC_031245
TCONS_00060683 mRNA upstream 48484 37316683 ~ 37341044 (-) True XLOC_031248
TCONS_00060684 mRNA upstream 549671 37817870 ~ 37820878 (-) True XLOC_031252
TCONS_00060685 mRNA upstream 596506 37864705 ~ 37881345 (-) False XLOC_031253
TCONS_00060686 mRNA upstream 598935 37867134 ~ 37875636 (-) False XLOC_031253
TCONS_00060687 mRNA upstream 601710 37869909 ~ 37871526 (-) True XLOC_031253
TCONS_00060656 other downstream 1443699 35823418 ~ 35823548 (-) True XLOC_031231
TCONS_00060637 other downstream 2302460 34918991 ~ 34964787 (-) True XLOC_031220
TCONS_00060636 other downstream 2433154 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060631 other downstream 2651281 34603814 ~ 34615966 (-) False XLOC_031219
TCONS_00060628 other downstream 3029224 34237907 ~ 34238023 (-) True XLOC_031218
TCONS_00060692 other upstream 622408 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060699 other upstream 680655 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other upstream 685137 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060704 other upstream 767138 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060729 other upstream 1222147 38490346 ~ 38506648 (-) True XLOC_031273