Fish Transcriptome and Expression Database

RNA id: XM_036974078.1

Basic Information

Item	Value
RNA id	XM_036974078.1
length	3937
RNA type	mRNA
GC content	0.44
exon number	4
gene id	LOC110519327
representative	True

Chromosome Information

Item	Value
chromosome id	NW_023493846.1
NCBI id	JAAXML020000543.1
chromosome length	111414
location	68860 ~ 74182 (+)
genome version	USDA_OmykA_1.1_2020_rainbow_trout_Genome
species	rainbow trout (Oncorhynchus mykiss)

Sequence

ggtcttcactctcAAAGCTGCCATCAGAATACTCTTGAGTTACGTTCCACCACTACTGAACCAAATTAGAACTTAGATTTTAAATTACAATGTCAAACCTTTTCTGTCAttgtgtttcctctctctctctgtctctctatctgtagtTGCCATCGGAGACAGCGTCGTTAGATACAGAGTTTCCCATGGCGACGGTGGAGCTCCTCCACCGGCTGTGTCACATGGTGAAGGGGGAGCTGGGATACGGGTTCAACCTGCACAGTGACAGAACACGGCGAGGACAGTTCATACGCAGCGTGGATCCCGGGTCCCCCGCCCAACACGCAGACCTCAGATCCCGGGACAGGCTGGTGGAGgtgAATGGAGTGAACATCGAGGCGTTGAGACACTCAGAGGTGGTGGCGTTTATACGTGGCGGGGGGGACGAGACACGCCTCCTGGTGGTCGACGCGGAAACAGACGAGCTGTTCAAGAGGCTCGGGGTCACGCCCACCAGCACACATGTCAGAGAGGTCTATGTGGACGAGCCAATGACAGACAGCGCCCCACCCACCCCCTCTTCAACCACTGACCTCACTCCAATGGATCCACCAATCATCAACGTCACCCTGATGGGCTCACCAATCACCAACGGCTCGCCCAATTCACAGACCAATTCCCAGTACTCACGTGGCTCGACTACCCAATCAGAATTCAGCAGCTCAGATATGAGCattcaggtccctGAGGATTATGAGCGCCGTGTTTCAGACCCGTTCCTGGACAGCGGACTGCATCTGAGCCCCACGGCAGCCGAGGCCAAAGAGAGGGCCCAACACGGCAAGAAGAGAGCGCCCCCTATGGACTGGAGCAAGAAGCAGGAGATCTTCAGCAACTTCTGAGAaccacacagaaccacacagaaCCTTCACAACAATGTTCTTAAGTCCCTCAAGGTTGATAAAGGTCTGGCACAGGGACACACCATAACCAATGTTGGCCGTGCGCAGTAGATCATCAGCCCGGAGACAATTTCATCGTGGGAAATTAATAGCAAATGGCAGCCAATGTTTTGTGGTGAGAGGCGATAGGAGGACCTCACGCTGCGCACGGCTGACGTTCGTTATGGTGTGTCATGTGACAGAGCTTCACCAGCCAATGTTCTGAGGTGAGAGGTGATAGGAGGACCTCCCGCTGCTGCTCGGCTGCTCGTTATGGTGCGTCATGTGACAGAGCTTCAACAGCCAATCAAGATAAAAGGCTGCAGTGGCTCCGAAACAACTCTGAGAAAAACACAGAAAGCCTCTGTCCCCGGCAGGATCTGAACCCTGGTCTCCCACGGGACAAACCAACATCTTAACCATTAGACAAAGAGGAAATTCCCTGTGTGTCTGAGGGCCAACACTTATTGTGAAGTCACACGCGGGGCTCCCTCATCACGTGACCATGAGCAGCCATGACCGTCCCATATCTGCTACACctccatataccactactatggATTATTACAGTACCTTAGGATGAGGATAAATCATGTTGAAGTATTTAGCCAGGATAATTGACTCAGTTCCACTTGTTTCCATGGCTCTTGTTTCCATGGCTCTAGTTTCCATGGCTCTTGTTTCCATGGCTCCTAAACGTTTCTCAGAGCTGTGATTTCACTGAAAGTTTTTTTTTCCTTCTACAGCAACTAGTAAGAAACATTCACTGGCCCAACCACCACACACCGAACCCCACCCCACCTCTTCACCCTCCACAGAAAAACAGGGTGGATTGTTTCCCAAAAGACTGAGAggtgggcccgtatccacaaagtgtctcaaagtaggagtactgatctaggatcagtttagagttttttttttatgtcataaTGAATACAATAAATTGTATAGGGAAGGATCTGATCCTAGTTTTATTAGATCTGAGGTAAGAACGTCAGGACACCACAACATCCGGGCCGGCTTACAGATGTGACCCCTGTGGCCGAGTCTTCCTCTCACGGACCGGACTTCACGGTCACAGCAGATGCTGCGCTAAGATCTAACTCCAAGGCACAataaagaaccctttttggttccagatagaacctcTTGTTCCAAATAGAACTCTTGAAAGGCTGCTGTTTGGAACCTAAAGGGGTTATCGTCTGACCTGACCTGGTTCTTACCTGGAACCTTTTCCAGAGGGTTCAACAGGGACAAATGGTTCTACATAGCCCTTTTGAGAGTATAGAAGCGAGCTTCTCAGATGTATAAATGAGGTACGTAGGAACCACATCACGTCATAGACACGGACGTCTGAATGATGGACAGACTGAGGGGATGAATCCTCTGACCGTGAGATGAAGAGACGCTGAGAAACAGAGACAAACACTCAAATTAGTGTGATGGGCGTCAcagaggtagagaaggaaagtCCAGGATCTCAATGGATTTTCAGATGAAGAGATACGAGTTACTGAAGTCCTTTGTAATGAGGGAAGAGGAGACACATTGGGAATTGGGTGCATTACATTGGGTTGACTGAACTCTACAGCATAAATGTTGCctagactgcagagagagacttGTGTCAATGTGTAGGCCAACAAATGCCTGAACGGTTCGCCATTAAGATAAAACCACTATTTATGTGATTATGACTGATTTATATTATTCTGTGATATTATTAGCAATTTGTTTACAAACTGTGTTCTTCTAGTATTTAAATATTTGGTTTTTATTCTGTCACAATTTCCGGTTGGAAAGTAAGACACACCCAGCCAGCTTTGTCTGTCTCTGCTGTCCAGAACAGAACTCTGAGTTGAAGGAAGAAATGGGAGGAGCCGGGTTAAGCTCTAGATTTGTTTATATTTTGTGTAATTATATTATTGTTTGTGGTTGAATCCCACTTTCGTTGTCCTCAAACATTCATCACTTTTTAGAGGAATTCATAAATGGACCCATTTTAGTTCGTTTGACTAGTTTGGTTACGAAGCTAAGCTAGTTTCAGTGCAGACCGATGTCTCAGTGCCGGGATTCAATCAGATCAGCGCTAGATCTGCATTGTAGCACGGatgacatttaaaggtaattgACAATGGAGCCGACATGTGCAGAATTTGCCGTGAATGCGGTCTTCTGCGATCGCGGGAACTTTCCCTTTAAAAGGTGAATAGTGAATCCCGGCCTTACTTTTAATGTGATCATCTCTCCAGTTGTAAATTTGTATCTAATGTAACAAAGTTACATTTAATTTGATCATCTCTCCAGTTGTAGATTTGTATCTATTGTAACTAAGTTACTTTTAATGTGATCATCTCTCCACTTGTAGATTTGTATCTAATGTAACTAAGTTACTTTTAATGTGATCATCTCTCCAGTTGTAGATTTGTATCTAATGTAACTAAGTTACTTTTAATGTGATCATCTCTCCAGTTGTAAATTTGTATCTAATGTAACTAAGTTACTTTTAATGTGATCATCTCTCCAGTTGTAAATTTGTATCTAATGTAACTAAGTTACTTTTAATGTGATCATCTCTCCAGTTGTAAATTTGTATCTAATGTAACTAAGTTACTTTTAATTTGATCATCTCTCCAGTTGTAGATTTGTATCTAATGTAACTAAGTTACTTTTAATTTGATCATCTCTCCAGTTGTAGATTTGTATCTAATGTAACTAAGTTACTTTTAATTTGATCATCTCTCCAGTTGTAGATTTGTATCTAATGTAACTAAGTTACATTTAATTTGATAATCTCTCCAGTTGTAAATATGAATCTACTGTAACCAAGGCTATTATATGAACACAAAGTGGACTGGACATTAATATGAAAtaaaatgacaaaataaatgtttaacaCTGTCGTTCTGTATTGCTGTAGATGAGCAGTGGTATGGTTTCTCTTTTGTTGCACCATCTCTTCACAATCAATATGATCTAGAATAATTCTTAAATGTGTTTTGAGGGGACAT

Function

GO: NA

KEGG: NA

JBrowse2

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
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Neighbor

RNA id	RNA type	direction	distance	location	representative	gene id
TU2721545	lncRNA	upstream	10019	58162 ~ 58841 (+)	True	G2369915
XM_036974076.1	mRNA	upstream	48411	7700 ~ 20449 (+)	True	LOC118954944
XM_036974077.1	mRNA	upstream	48629	7700 ~ 20231 (+)	False	LOC118954944
TU2721554	other	downstream	2466	76648 ~ 77511 (+)	True	G2369922

gene	XLOC_000007 f7
RNA	TCONS_00000019
bioproject	PRJEB12982

economic fish

Basic

Function

Jbrowse2

Neighbor

Expression

RNA id: XM_036974078.1

Basic Information

Chromosome Information

Sequence

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

Expression Profile

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