RNA id: TCONS_00060715


Basic Information

Item Value
RNA id TCONS_00060715
length 851
RNA type mRNA
GC content 0.46
exon number 3
gene id XLOC_031266
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38176040 ~ 38179220 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTATACCATTGTGAAATCTGGTTAAGCAGGAAATTTTTTTCAAAGACGTTTTGTTTCTTGTCGCATGAAGGGGAGATCCTTGAGTCTTCAGTTTGTCCATCAGTGGAAGTAGTCCAGGAGTATTTGTGCCATGAGCACTACAAAGTGTCCCAGCTGTGGGAGCTCTGATGTTGGTGTTTTGGACAGTCAGCGAGCGGTCTGCAGGTATTGCTCTGAAGTGAAACGGCGTGTGTTTCAGTTCTGTTGCGATTGTCAGAGAGAATGGCCACCTAATGCTTCAAGAACCAGTGCCTGCACGCTGCCAGACTGTGCACTCCGTGCTGCCCTCCTCAGCGACACAAAAATCAGTGACCCATTCAGCTCGGCAAGAGGATGTCCGTTTTTCAGGGCCTGTCCACAGTGCAAGGCCCTGCTAACTCACAATGGTGAAGGATGTCCCAACATCACTTGCCCTCATTGTCACACAGATTTCTGCTTCCGCTGCCTGAGTCGATGGTGTAGTGGGTTAAGGGATTTTGATATTGATATTGATGGTTTTCATCAACAATGGCTTTTACGTCATTGTCATGAAATAGATATATGTAGAGTGGTAGACAACAAGAGTCTCAACATTTTTAGCAGATGATTGAATGGCCAACTTAGCTCTGTttgtaaaattttttaaaaataatcattgaggtatgggcgacacagtggtgcagtaggtagtgctatcgccttacaacaagaaggtcgctggttcaagcctcggctgggtcagttggcgtttttgtgtggagtttgcatgttctccctgcattcgcatgggtttccttcgggtgctctggtttcccccacagtccaaagac

Function

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0000422 autophagy of mitochondrion biological_process
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0010821 regulation of mitochondrion organization biological_process
GO:1900407 regulation of cellular response to oxidative stress biological_process
GO:0001933 negative regulation of protein phosphorylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-157 Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including autophagy of mitochondrion; cellular protein metabolic process; and regulation of cellular protein metabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus; cytosol; and endoplasmic reticulum.

Ensembl:

ensembl_id ENSDART00000147701

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061542 lncRNA downstream 69241 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00061541 lncRNA downstream 281149 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 464190 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061540 lncRNA downstream 572305 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062048 lncRNA downstream 693020 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00062050 lncRNA upstream 70824 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00060719 lncRNA upstream 70824 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062051 lncRNA upstream 435648 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 441737 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00062053 lncRNA upstream 593127 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00060714 mRNA downstream 5044 38167810 ~ 38170996 (-) True XLOC_031265
TCONS_00060712 mRNA downstream 15007 38123633 ~ 38161033 (-) False XLOC_031264
TCONS_00060713 mRNA downstream 21035 38123641 ~ 38155005 (-) True XLOC_031264
TCONS_00060711 mRNA downstream 53914 38110384 ~ 38122126 (-) False XLOC_031263
TCONS_00060710 mRNA downstream 53914 38110384 ~ 38122126 (-) True XLOC_031263
TCONS_00060716 mRNA upstream 14233 38193453 ~ 38197080 (-) True XLOC_031267
TCONS_00060717 mRNA upstream 36704 38215924 ~ 38248462 (-) False XLOC_031268
TCONS_00060718 mRNA upstream 38160 38217380 ~ 38248347 (-) True XLOC_031268
TCONS_00060720 mRNA upstream 122686 38301906 ~ 38384755 (-) False XLOC_031270
TCONS_00060721 mRNA upstream 126353 38305573 ~ 38384289 (-) False XLOC_031270
TCONS_00060704 other downstream 137823 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 212277 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 216061 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060692 other downstream 281149 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060682 other downstream 907841 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060729 other upstream 311126 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060736 other upstream 518276 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 618984 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 634944 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 713402 38892622 ~ 38892759 (-) True XLOC_031286

Expression Profile

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