Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006165 |
| length | 1444 |
| RNA type | mRNA |
| GC content | 0.52 |
| exon number | 2 |
| gene id | XLOC_003122 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 1409622 ~ 1412356 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005979 | regulation of glycogen biosynthetic process | biological_process |
| GO:0000164 | protein phosphatase type 1 complex | cellular_component |
| GO:0008157 | protein phosphatase 1 binding | molecular_function |
| GO:2001069 | glycogen binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-110201-1 | Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3D (protein phosphatase 1 regulatory subunit 3D). |
| ensembl_id | ENSDART00000157042 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00006160 | lncRNA | upstream | 691247 | 714718 ~ 718375 (+) | True | XLOC_003117 |
| TCONS_00008508 | lncRNA | upstream | 865428 | 543348 ~ 544194 (+) | True | XLOC_003112 |
| TCONS_00006151 | lncRNA | upstream | 870015 | 537022 ~ 539607 (+) | True | XLOC_003111 |
| TCONS_00008507 | lncRNA | upstream | 904793 | 498446 ~ 504829 (+) | False | XLOC_003109 |
| TCONS_00006167 | lncRNA | downstream | 109771 | 1522127 ~ 1524414 (+) | False | XLOC_003124 |
| TCONS_00006170 | lncRNA | downstream | 112554 | 1524910 ~ 1526754 (+) | True | XLOC_003124 |
| TCONS_00008509 | lncRNA | downstream | 201044 | 1613400 ~ 1615142 (+) | True | XLOC_003129 |
| TCONS_00008376 | lncRNA | downstream | 523328 | 1935684 ~ 1937142 (+) | False | XLOC_003132 |
| TCONS_00008510 | lncRNA | downstream | 523334 | 1935690 ~ 1997410 (+) | False | XLOC_003132 |
| TCONS_00006164 | mRNA | upstream | 594406 | 807153 ~ 815216 (+) | True | XLOC_003121 |
| TCONS_00006163 | mRNA | upstream | 619318 | 779754 ~ 790304 (+) | True | XLOC_003120 |
| TCONS_00006162 | mRNA | upstream | 637163 | 769623 ~ 772459 (+) | True | XLOC_003119 |
| TCONS_00006159 | mRNA | upstream | 690874 | 714386 ~ 718748 (+) | False | XLOC_003117 |
| TCONS_00006158 | mRNA | upstream | 691081 | 714386 ~ 718541 (+) | False | XLOC_003117 |
| TCONS_00006166 | mRNA | downstream | 100215 | 1512571 ~ 1520946 (+) | True | XLOC_003123 |
| TCONS_00006168 | mRNA | downstream | 109780 | 1522136 ~ 1530865 (+) | False | XLOC_003124 |
| TCONS_00006171 | mRNA | downstream | 120741 | 1533097 ~ 1546015 (+) | True | XLOC_003125 |
| TCONS_00006173 | mRNA | downstream | 139247 | 1551603 ~ 1574656 (+) | False | XLOC_003127 |
| TCONS_00006174 | mRNA | downstream | 139250 | 1551606 ~ 1574656 (+) | False | XLOC_003127 |
| TCONS_00006161 | other | upstream | 678699 | 730807 ~ 730923 (+) | True | XLOC_003118 |
| TCONS_00006147 | other | upstream | 1038182 | 371322 ~ 371440 (+) | True | XLOC_003107 |
| TCONS_00006169 | other | downstream | 109823 | 1522179 ~ 1529327 (+) | False | XLOC_003124 |
| TCONS_00006172 | other | downstream | 133761 | 1546117 ~ 1546231 (+) | True | XLOC_003126 |
| TCONS_00006199 | other | downstream | 778265 | 2190621 ~ 2190730 (+) | True | XLOC_003138 |
| TCONS_00006215 | other | downstream | 1221435 | 2633791 ~ 2649394 (+) | False | XLOC_003150 |
| TCONS_00006226 | other | downstream | 1332708 | 2745064 ~ 2747797 (+) | True | XLOC_003154 |
