RNA id: TCONS_00006189


Basic Information

Item Value
RNA id TCONS_00006189
length 3571
RNA type mRNA
GC content 0.54
exon number 25
gene id XLOC_003130
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1628538 ~ 1864288 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGATGCCACTCCGGCTTCAGACTGAAGGATGATGGGAAGACGTGTGTGGATGTGGACGAGTGCTCCACCACGTACCCCTGCACGCAGCACTGCATCAACACACACGGCAGCTTCAGATGTGTCTGTGTGGATGGGTTCCAGCTCAGCCCCTCCGACCCCACCATCTGCAAATCCACCTCTGACGAGGAGCCGTTCCTCATCTTCGCCAACCGTTATTACCTGAGAAAGCTCAACCTGGACGGCTCAAACTACACTCTTCTGAAGCAGGGTCTGAATAACGCCGTGGCGCTGGACTTCGACTACAGACAGCAGATGATCTACTGGACAGATGTGACCACTCAGGGCAGCATGATCAGACGCATGAACATCAACGGAAGCAACGTGCAGGTTCTGCACCGCACGTCTCTCAGTAACCCAGACGGTCTGGCTGTTGATTGGGTCGGTGGAAACTTATACTGGTGTGATAAAGGAAGGGACACTATAGAGGTGTCCAAGCTGAATGGAGCGTACAGGACTGTCCTGGTCAATTCAGGACTGAGGGAACCACGAGCTGTCGCTGTGGACGTACGCAATGGgtATCTGTACTGGTCAGACTGGGGTGATATTCCTCACATCGGCCGCATCGGGATGGACGGCACCAACAGAAGTGTGATCGTTCAGGACAAGATAACCTGGCCCAACGGCCTGACTCTGGACTTTATCAATGACCGCATCTACTGGGCTGATGCCAGAGAAGATTACATCGAGTTCGCCAGCTTAGATGGAACCAACAGACACACGGTGTTGAGTCAGGACATCCCGCACATCTTCGCCATGACTCTATTCGAGGAGTTCATCTACTGGACGGACTGGGAGACCAAGTCCATCAACAGAGCTCATAAAACACAGGGAACCAACAAGAGCATGTTGATCAGCACGCTACACAGACCCATGGACATCCACATCTTCCACCCCTACAGACAGCCTGAAGTGCCGAATCACCCGTGTCAGACAGATAACGGCGGCTGCAGTAACCTGTGTCTGCTGTCTCCTGGTGGAGGCTATAAATGTGCCTGTCCCACAAACTTCTACCTGGCCGGCGATGGGAAACAGTGCATGTCCAACTGCACCGCCAGCCAGtTTGTCTGCAAGAATGATAAGTGTATCCCGTTCTGGTGGAAGTGTGACACTGAGGACGACTGCGGAGATCGCTCTGATGAACCCGCTGACTGCCCGGACTTCAAGTGCAGACCGGGTCAGTTCCAGTGCGGGACGGGCATCTGTACAAACCCTGCATACATCTGTGACGGAGACAACGACTGCCAGGACAACTCTGATGAGGCCAACTGCGatatCCATGTGTGTTTGCCCAGCCAGTTTAAGTGCACCAACCCCAGCCGCTGTATTCCTGGAATCTTCCGCTGTAACGGTCAGGATAACTGTGGAGAAGGAGAGGACGAGAAGGACTGCCcgGAGGTGACGTGCGCACCAAACCAGTTCCAGTGTACAGTAACCAAGCGCTGCATCCCTCGGGTGTGGGTTTGTGACCGTGACAATGACTGCGTGGATGGATCTGATGAACCCGCCAACTGCActcagATGACGTGTGGTGTGGATGAGTTTCGCTGTAAGGACTCTGGTCGCTGTATTCCTGCGCGCTGGAAGTGTGATGGAGAAGACGACTGCGGAGACTCTTCAGACGAGCCTAAAGAGGAGTGTGATGAGCGGACGTGTGAGCCGTATCAGTTCCGCTGTAAAAACAACCGCTGTGTTCCCGGACGCTGGCAGTGCGACTACGACAATGACTGTGGAGACAATTCAGATGAAGACAAGTGTGtgcccCGGCAGTGCTCAGAGAGTGAGTTTTCCTGCACTAGCGGCCGCTGTATCGCTGGCAGATGGAAGTGTGACGGAGATCATGATTGCGCCGATGGATCTGATGAgcacgGCTGTGATGTGAAGTGTGACAATGACCAGTTCCTGTGTAATAACGGTCACTGTATCCCGTTCCGCTGGCGCTGTGATGCTGATGCTGACTGTATGGACGGCAGCGATGAAGAAAACTGCCACACTGGagtggGTCAGTTCTGCCCTCTGGATGAGTTTCAGTGTAATAACACTCTCTGTAAGCCGCTGGGCTGGAAGTGTGATGGTGAAGACGATTGCGGAGACAATTCAGACGAAAACCCAGACGTCTGCAAGCAGTTCCAGTGTCCTCCATCCAGACAGTTCAGATGTCACAATGATCGTGTGTGTTTGCCGCTGTCCAAACACTGCGACGGCGTCAATAACTGCGGAGACAACAGCGATGAGCAGAACTGCCAAACTCCACCCCCTGCCGTCTGTGGAAAGAGTGAGTTCACCTGCAGCTCGGGGAAGTGTATCAGCTTAAACCTGCGCTGTAACTTCTTCAATGACTGCGAAGATTACGGCTCGGACGAGATCAACTGCAACAAGAAAGattcGGGTCTGAATGAATGCAGATTGAATCGCAGTATGTGTGGAGATGAAGGTCACTGTGTGGTGAATGGAAGTGACTCGTTCTGCTCCTGCAGACCCGGATTCCAGAAAACACACCCGCAAACCTGCTCAGATGTGAACGAGTGCCGGCAGTTCGGGATCTGCTCTCACATCTGCAACAACACTAAAGGAGGACACAAGTGCAGCTGCCACAAGAACTTCATCAGAGTCAACGACACCTGCAAAGCTGACAGCAGTGATAAGCAGGCTCTGTACGTGGCGGATGATAATGAAATCCGCAGTTTGTATCCTGGAATGCAGAACTGGATTTATGAACAGGCTTTTCAAGGAGACGCCAACGTCCGCATCGACGCCATGGACCTGCATATCAAATCCAAGCGCATCTTCTGGACCAACTGGCACACCGGCCGGATCTCTTCATTCGAGCAGCCGTCAGCCGGACCCACGTCACCAAACTCAAACCGCAACCGCAGACAGACCGATCCAAGAGTCACCGATCTGGAGATCCCGGGTCTGAAGATGCCGCGTGGCATTGCTGTGGATTGGGTGGCCAATAACATCTACTGGACGGACTCTGGTCGAGATGTGATCGAGGTGGCGCAGATGAACGGACGAAACCGAAAAACACTGATCTCAGGAATGATCGACGAGCCGTACGCCATCGTGGTGGATCCGCAGAGAGGCACCATGTACTGGGCCGACTGGGGAAACCATCCGAAGATCGAGACGGCGGCGATGGACGGGACCCTGAGAGAGACGCTGGTCCACGATAACATCCAGTGGCCCACAGATCTGCAGCAACCTTTCAGCATCGACATCTTTGAGGATTTCATATATGGAGTGACGTATCACAACAACTTTGTTTTCCGCGTCAACAAGTTTGGCAAGAGTTCCGTGGAGCATCTGACTACAGGAATGAACCACGCCACAGATCTGGTGCTCTACCACCCTTACAAACAGCCCGAGATGGCGAACCCATGTGACAGGAAGAAGTGCGAGTGGTTGTGTTTGCTGAGCCCCAGTGGTCCGGTCTGCACGTGTCCAAACGGCCGAATTCTGGACAACGGCACCTGTGTGGAGATTCCTGCCCCAACACTGAGCCCAGTCT

Function

GO:

id name namespace
GO:1901342 regulation of vasculature development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7889 Predicted to enable calcium ion binding activity. Acts upstream of or within regulation of vasculature development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in blood vessel and caudal vein plexus. Human ortholog(s) of this gene implicated in Alzheimer's disease; keratosis pilaris atrophicans; myocardial infarction; and sciatic neuropathy. Orthologous to human LRP1 (LDL receptor related protein 1).

Ensembl:

ensembl_id ENSDART00000172863

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008509 lncRNA upstream 194885 1613400 ~ 1615142 (+) True XLOC_003129
TCONS_00006170 lncRNA upstream 283273 1524910 ~ 1526754 (+) True XLOC_003124
TCONS_00006167 lncRNA upstream 285613 1522127 ~ 1524414 (+) False XLOC_003124
TCONS_00006160 lncRNA upstream 1091652 714718 ~ 718375 (+) True XLOC_003117
TCONS_00008508 lncRNA upstream 1265833 543348 ~ 544194 (+) True XLOC_003112
TCONS_00008376 lncRNA downstream 91856 1935684 ~ 1937142 (+) False XLOC_003132
TCONS_00008510 lncRNA downstream 91862 1935690 ~ 1997410 (+) False XLOC_003132
TCONS_00008377 lncRNA downstream 92023 1935851 ~ 1948106 (+) False XLOC_003132
TCONS_00008511 lncRNA downstream 92065 1935893 ~ 1946406 (+) False XLOC_003132
TCONS_00006193 lncRNA downstream 92065 1935893 ~ 1956153 (+) True XLOC_003132
TCONS_00006188 mRNA upstream 2444 1805421 ~ 1807583 (+) False XLOC_003130
TCONS_00006187 mRNA upstream 9823 1796426 ~ 1800204 (+) False XLOC_003130
TCONS_00006186 mRNA upstream 16464 1764203 ~ 1793563 (+) False XLOC_003130
TCONS_00006184 mRNA upstream 55397 1628538 ~ 1754630 (+) False XLOC_003130
TCONS_00006182 mRNA upstream 191940 1602916 ~ 1618087 (+) False XLOC_003129
TCONS_00006190 mRNA downstream 1959 1845787 ~ 1864288 (+) True XLOC_003130
TCONS_00006191 mRNA downstream 23785 1867613 ~ 1911354 (+) False XLOC_003131
TCONS_00006192 mRNA downstream 27793 1871621 ~ 1920517 (+) True XLOC_003131
TCONS_00006194 mRNA downstream 245633 2089461 ~ 2096469 (+) True XLOC_003134
TCONS_00006195 mRNA downstream 312602 2156430 ~ 2162821 (+) True XLOC_003135
TCONS_00006172 other upstream 263796 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 280700 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1079104 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006147 other upstream 1438587 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006199 other downstream 346793 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006215 other downstream 789963 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006226 other downstream 901236 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 1332858 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 1655362 3499190 ~ 3514108 (+) False XLOC_003165

Expression Profile

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