RNA id: TCONS_00061241


Basic Information

Item Value
RNA id TCONS_00061241
length 714
lncRNA type retained_intron
GC content 0.39
exon number 4
gene id XLOC_031619
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 66366865 ~ 66429357 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgTGGACTGATTCCTGTTGTTGTATTGATGAATCctttacccaaagagcaccgaccaaaTATTTGAGTTACTCCTGAGCgcttttggtttgtttttctgGATTAATATTTGTAGCTTTTCTAGAAAATCCTTTTTGATTCATGAGTTTTgcgatatttgaactagaaacaagacaaaaaatctaagtaagtaaagcagtttttgcagtgtgcttatttatatttatttatttctgtagtAGTTTTCTGATGTTTGTATTGATGTTTGGCATTCCTCTGAACATTCATTTTAACATTCAGATTCTTTGATTATAAAGATTTGACTGTGTAATTTTATGGTTAGCTCTTTGTTTTGCTAACACAACTTTGCTTTCACTTTCCATCAGTGATTCTGCTGATAAAGTGGTGTTGCACACTGGGAAATATGAAGAGTTGATCGTCTGCTCTCACGAGATCGCTGCTAGTACTGCACAGCTTGTTGCAGCCTCCAAGGTGAAAGCCGACCGTGGCAGTAAAAGGCTTGGCAATCTCCAGCAGGCCTCTCGTCATGTTAATGAGATGGCTGCTAAAGTGGTGGCGTCCACCAAGACAGGGCAGGACCAGGTCGAGGATAAGGacACCATGGACTTCTCTGGACTGTCTCTAATTAAgcttaaaaaagaagaaatggaATCACAGGTGAAGGTTCTGGAGCTTGAGACGATGTTAGAGAATG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0006915 apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0048260 positive regulation of receptor-mediated endocytosis biological_process
GO:0048268 clathrin coat assembly biological_process
GO:0007015 actin filament organization biological_process
GO:2000369 regulation of clathrin-dependent endocytosis biological_process
GO:0030136 clathrin-coated vesicle cellular_component
GO:0005905 clathrin-coated pit cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0032051 clathrin light chain binding molecular_function
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0005543 phospholipid binding molecular_function
GO:0035615 clathrin adaptor activity molecular_function
GO:0035091 phosphatidylinositol binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0030276 clathrin binding molecular_function
GO:0003779 actin binding molecular_function
GO:0080025 phosphatidylinositol-3,5-bisphosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070209-59 Predicted to enable actin filament binding activity; anion binding activity; and clathrin binding activity. Predicted to be involved in several processes, including actin filament organization; activation of cysteine-type endopeptidase activity involved in apoptotic process; and clathrin coat assembly. Predicted to act upstream of or within apoptotic process and regulation of clathrin-dependent endocytosis. Predicted to be located in clathrin-coated pit and cytoplasm. Predicted to be active in actin cortical patch and clathrin-coated vesicle. Orthologous to human HIP1R (huntingtin interacting protein 1 related).

Ensembl:

ensembl_id ENSDART00000164118

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061562 lncRNA downstream 125088 66239915 ~ 66244132 (-) True XLOC_031616
TCONS_00062148 lncRNA downstream 344276 66022664 ~ 66024944 (-) True XLOC_031612
TCONS_00062147 lncRNA downstream 694965 65670605 ~ 65674255 (-) False XLOC_031608
TCONS_00061210 lncRNA downstream 1348073 65017076 ~ 65021147 (-) True XLOC_031600
TCONS_00062146 lncRNA downstream 1588996 64774973 ~ 64780224 (-) True XLOC_031594
TCONS_00061245 lncRNA upstream 368883 66740238 ~ 66744922 (-) True XLOC_031622
TCONS_00061249 lncRNA upstream 443132 66814487 ~ 66817206 (-) False XLOC_031624
TCONS_00061260 lncRNA upstream 888988 67260343 ~ 67267669 (-) True XLOC_031630
TCONS_00061265 lncRNA upstream 911011 67282366 ~ 67283489 (-) False XLOC_031631
TCONS_00061267 lncRNA upstream 917056 67288411 ~ 67292666 (-) False XLOC_031631
TCONS_00061238 mRNA downstream 17520 66347006 ~ 66351700 (-) True XLOC_031618
TCONS_00061236 mRNA downstream 68078 66282256 ~ 66301142 (-) False XLOC_031617
TCONS_00061237 mRNA downstream 72585 66289946 ~ 66296635 (-) True XLOC_031617
TCONS_00061235 mRNA downstream 153292 66203154 ~ 66215928 (-) True XLOC_031615
TCONS_00061234 mRNA downstream 208805 66157117 ~ 66160415 (-) True XLOC_031614
TCONS_00061243 mRNA upstream 305001 66676356 ~ 66702479 (-) True XLOC_031621
TCONS_00061244 mRNA upstream 361934 66733289 ~ 66749535 (-) False XLOC_031622
TCONS_00061246 mRNA upstream 384393 66755748 ~ 66768121 (-) False XLOC_031623
TCONS_00061247 mRNA upstream 384393 66755748 ~ 66798729 (-) True XLOC_031623
TCONS_00061248 mRNA upstream 435824 66807179 ~ 66823794 (-) False XLOC_031624
TCONS_00061223 other downstream 694585 65670605 ~ 65674635 (-) True XLOC_031608
TCONS_00061221 other downstream 1118746 65250379 ~ 65250474 (-) True XLOC_031606
TCONS_00061202 other downstream 1486140 64870969 ~ 64883080 (-) True XLOC_031597
TCONS_00061185 other downstream 2383660 63985444 ~ 63985560 (-) True XLOC_031585
TCONS_00061181 other downstream 2659537 63709618 ~ 63709683 (-) True XLOC_031581
TCONS_00061242 other upstream 165862 66537217 ~ 66537334 (-) True XLOC_031620
TCONS_00061253 other upstream 790087 67161442 ~ 67164419 (-) True XLOC_031627
TCONS_00061262 other upstream 908863 67280218 ~ 67292651 (-) False XLOC_031631
TCONS_00061263 other upstream 910992 67282347 ~ 67292646 (-) False XLOC_031631
TCONS_00061264 other upstream 911004 67282359 ~ 67292631 (-) False XLOC_031631

Expression Profile

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