RNA id: TCONS_00061245


Basic Information

Item Value
RNA id TCONS_00061245
length 782
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_031622
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 66733289 ~ 66749535 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATGAGGTAAGTGGCTAGAGATCAcattattgttactattaatattattattcagccATTATTGGGATTTGTTTTTACTCTCAATTGACTTTAGTATTTAAATCCTCACCACTGAATCCTTTTGCATTTAACTTGTCCCACAATTATTATACGGAAATCtcgaatttttaatttttacaaaattagtTCTGAATTTTAAGGGATGGTTTTACATCATCAGCACAGTTTAGAGAGCTTTCCACCACTTTATTCAgaaaatgtactgttatttttacagattttattgttataattgagGTTAGTGTCTTCTTTCCTTTAATTCCTCTCCTTTCTGATTGCTCTTTCAGAAGAGAAAAGCAGAGTCTGTCTCTTTGGCTACACAAGTTACAGCAGCGACTCCAGTGCCTTCACTTCCCAGCTCTGCAGAGGCAAGTCAGGCCTCAGTGTATCCCGCCATGAGAGACTCTTCATTCAGCATTAAAGCCAGAGAAGAACACGAGCAGCTCACATCTCTCACcacaAATGGCACCACACGTCGTCTAATTCCTTCTCAACCaggaagaaaaaggaaaaatTGTGTAGGGACGGAAGAGATTGTAAAGGTGTTCCAGAATAACAGCCCCCGCTCCTCCACCGTCTATTTGCCACCAGGAGAGGATTCTCAGGACAGTTCTGATGGTATTCCCTCTGCTCCCCGCATGACTGGTAGTTTGGTGTCGGACCGCAGTCACGATGACATCATCACTCGAATGAAGAACATAGACTGTATTGAGCTGGGCAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0016573 histone acetylation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0042393 histone binding molecular_function
GO:0003712 transcription coregulator activity molecular_function
GO:0004402 histone acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-985 Predicted to enable histone acetyltransferase activity; histone binding activity; and transcription coregulator activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within histone acetylation and regulation of transcription, DNA-templated. Predicted to be part of NuA4 histone acetyltransferase complex. Orthologous to human KAT5 (lysine acetyltransferase 5).

Ensembl:

ensembl_id ENSDART00000140282

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061241 lncRNA downstream 368883 66369220 ~ 66371355 (-) True XLOC_031619
TCONS_00061562 lncRNA downstream 496106 66239915 ~ 66244132 (-) True XLOC_031616
TCONS_00062148 lncRNA downstream 715294 66022664 ~ 66024944 (-) True XLOC_031612
TCONS_00062147 lncRNA downstream 1065983 65670605 ~ 65674255 (-) False XLOC_031608
TCONS_00061210 lncRNA downstream 1719091 65017076 ~ 65021147 (-) True XLOC_031600
TCONS_00061249 lncRNA upstream 69565 66814487 ~ 66817206 (-) False XLOC_031624
TCONS_00061260 lncRNA upstream 515421 67260343 ~ 67267669 (-) True XLOC_031630
TCONS_00061265 lncRNA upstream 537444 67282366 ~ 67283489 (-) False XLOC_031631
TCONS_00061267 lncRNA upstream 543489 67288411 ~ 67292666 (-) False XLOC_031631
TCONS_00061266 lncRNA upstream 543489 67288411 ~ 67292673 (-) True XLOC_031631
TCONS_00061243 mRNA downstream 37759 66676356 ~ 66702479 (-) True XLOC_031621
TCONS_00061239 mRNA downstream 310881 66366865 ~ 66429357 (-) False XLOC_031619
TCONS_00061240 mRNA downstream 342550 66368957 ~ 66397688 (-) False XLOC_031619
TCONS_00061238 mRNA downstream 388538 66347006 ~ 66351700 (-) True XLOC_031618
TCONS_00061236 mRNA downstream 439096 66282256 ~ 66301142 (-) False XLOC_031617
TCONS_00061246 mRNA upstream 10826 66755748 ~ 66768121 (-) False XLOC_031623
TCONS_00061247 mRNA upstream 10826 66755748 ~ 66798729 (-) True XLOC_031623
TCONS_00061248 mRNA upstream 62257 66807179 ~ 66823794 (-) False XLOC_031624
TCONS_00061250 mRNA upstream 74524 66819446 ~ 66823750 (-) True XLOC_031624
TCONS_00061251 mRNA upstream 334618 67079540 ~ 67115872 (-) True XLOC_031625
TCONS_00061242 other downstream 202904 66537217 ~ 66537334 (-) True XLOC_031620
TCONS_00061223 other downstream 1065603 65670605 ~ 65674635 (-) True XLOC_031608
TCONS_00061221 other downstream 1489764 65250379 ~ 65250474 (-) True XLOC_031606
TCONS_00061202 other downstream 1857158 64870969 ~ 64883080 (-) True XLOC_031597
TCONS_00061185 other downstream 2754678 63985444 ~ 63985560 (-) True XLOC_031585
TCONS_00061253 other upstream 416520 67161442 ~ 67164419 (-) True XLOC_031627
TCONS_00061262 other upstream 535296 67280218 ~ 67292651 (-) False XLOC_031631
TCONS_00061263 other upstream 537425 67282347 ~ 67292646 (-) False XLOC_031631
TCONS_00061264 other upstream 537437 67282359 ~ 67292631 (-) False XLOC_031631
TCONS_00061285 other upstream 1143924 67888846 ~ 67895855 (-) False XLOC_031642

Expression Profile

//