RNA id: TCONS_00061285



Basic Information


Item Value
RNA id TCONS_00061285
length 740
RNA type processed_transcript
GC content 0.47
exon number 4
gene id XLOC_031642
representative False

Chromosome Information


Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 67884087 ~ 67895855 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACTGGAGGCTTGTGTGTCAACGTTAGCGTCTCCGCAGACAGCGGGACAGTATGGCATCAGTGGTGTTCAGACATTGCTCAAATGTTCTTAAAATAAGCCTCCGGAAATCCACAGCTCTCCCGCACATTTTAACGGGTGTTCGGCACAAGACCACAATTCAGTATGCAACACGAGCCGATCTGCCAAAGCTGGCCTACAGAAAGCTGAAAGGGAAGAGTCCTGGTGTGGTTTTCTTGCCCGGTTTCGCCTCACACATGGGTGGACAGAAAGCAGAAGCATTAGAGGAGTTCTGCAAGTCTTTAGGGCACTCGTGCCTGAGGTTTGACTATTCTGGCTGTGGATCATCTGAGGGCGAATTGACGAACTACACTATTGGAGCCTGGAAGAAGGATGTGCTCTATGTGCTGGATGAGCTAGTAGAAGGCCCACAGATTCTGGTGGGCTCCAGCATGGGTGGGTGGTTGATGCTGCTGGCTGCTCTTGCACGTcctgagaaaacagctgctttagtgGGCATCTCAACAGCTGCGGATCACTTCGTCACAGCCTTCAACGCACTACCTATAGAGGTACGAAAGCCTTCAAAGTCAGATCAAATGATTAAAGCAAGTCCGTTTGTTGGGGTTTTAATACAAACTGTGTATATTGTAAGTATAACAAATTACTCTTACTGTCGCTCATACTTTTACACTtgtggaatttacatgagaactAGAAAACAATGTTTGAGGCTCATGACA

Function


GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-144 Predicted to enable hydrolase activity, hydrolyzing O-glycosyl compounds and palmitoyl-(protein) hydrolase activity. Predicted to be involved in protein depalmitoylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in mitochondrion. Orthologous to human ABHD10 (abhydrolase domain containing 10, depalmitoylase).

Ensembl:

ensembl_id ENSDART00000169254

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00061266 lncRNA downstream 596173 67288411 ~ 67292673 (-) True XLOC_031631
TCONS_00061267 lncRNA downstream 596180 67288411 ~ 67292666 (-) False XLOC_031631
TCONS_00061265 lncRNA downstream 605357 67282366 ~ 67283489 (-) False XLOC_031631
TCONS_00061260 lncRNA downstream 621177 67260343 ~ 67267669 (-) True XLOC_031630
TCONS_00061249 lncRNA downstream 1071640 66814487 ~ 66817206 (-) False XLOC_031624
TCONS_00062149 lncRNA upstream 68652 67964507 ~ 67972342 (-) True XLOC_031644
TCONS_00061296 lncRNA upstream 310097 68205952 ~ 68214334 (-) True XLOC_031650
TCONS_00062150 lncRNA upstream 726243 68622098 ~ 68668542 (-) True XLOC_031656
TCONS_00062151 lncRNA upstream 918068 68813923 ~ 68816110 (-) True XLOC_031659
TCONS_00062152 lncRNA upstream 994622 68890477 ~ 68892779 (-) False XLOC_031662
TCONS_00061283 mRNA downstream 10782 67869785 ~ 67878064 (-) True XLOC_031641
TCONS_00061281 mRNA downstream 89025 67785991 ~ 67799821 (-) False XLOC_031640
TCONS_00061282 mRNA downstream 89229 67788013 ~ 67799617 (-) True XLOC_031640
TCONS_00061280 mRNA downstream 105253 67768162 ~ 67783593 (-) True XLOC_031639
TCONS_00061279 mRNA downstream 126412 67737445 ~ 67762434 (-) True XLOC_031638
TCONS_00061287 mRNA upstream 13789 67909644 ~ 67911111 (-) True XLOC_031643
TCONS_00061288 mRNA upstream 84332 67980187 ~ 67993086 (-) False XLOC_031645
TCONS_00061290 mRNA upstream 111317 68007172 ~ 68022631 (-) True XLOC_031646
TCONS_00061291 mRNA upstream 141774 68037629 ~ 68058168 (-) True XLOC_031647
TCONS_00061292 mRNA upstream 164069 68059924 ~ 68074592 (-) False XLOC_031648
TCONS_00061262 other downstream 596195 67280218 ~ 67292651 (-) False XLOC_031631
TCONS_00061263 other downstream 596200 67282347 ~ 67292646 (-) False XLOC_031631
TCONS_00061264 other downstream 596215 67282359 ~ 67292631 (-) False XLOC_031631
TCONS_00061253 other downstream 724427 67161442 ~ 67164419 (-) True XLOC_031627
TCONS_00061242 other downstream 1351512 66537217 ~ 66537334 (-) True XLOC_031620
TCONS_00061289 other upstream 86976 67982831 ~ 67993072 (-) True XLOC_031645
TCONS_00061295 other upstream 181279 68077134 ~ 68088347 (-) True XLOC_031649
TCONS_00061305 other upstream 722103 68617958 ~ 68618089 (-) True XLOC_031655
TCONS_00061320 other upstream 1126004 69021859 ~ 69021962 (-) True XLOC_031664
TCONS_00061350 other upstream 1760539 69656394 ~ 69656508 (-) True XLOC_031681

Expression Profile


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