RNA id: TCONS_00061360


Basic Information

Item Value
RNA id TCONS_00061360
length 2106
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_031688
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 69926766 ~ 69948119 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCTAACACAATGAGTCCCAGAGGAAGCACCGGTGTTTTTCTCCTGCTAGCGCTTCTGCTGAACCAAAACCTGCTTTGTGTTTCAGGAGGGAAGATCCTCGTCTGGCCGGCTGAATTCAGCCACTGGCTCAATATTAAAGTCATCCTAGATGTGCTGATTGAAAGAGGACACAATATCACAGTGGTGACCCACACGGCCACACCGTCAGTCCAGACCACCCCATCAGCTGGATACAATGCGGAGATTTTACAGGTGCCATATACAAAGCAGGAAATCGTGGACAATTTGGAGAGGATGCTGAAATACTGGACTCATGACCTACCCAATGATAACATAATCACAGCTTCGCTGAAGATCCATGAGATGATTACTACAGCCACAGCGCAGAATAAAATCACATGCAATGCACTCTTTTCCAGAGCAGATCTGCTTGAGAAGTGGAAGATGGAGAAGTTTGACGTGATACTAGCTGATCCGCTTTATATATGCGGAGAGATTCTGGCCCAGAAACTGGACATACCGTTAATATTCAGCCTCAGGTTTACTTTTGGCAACACTCTGGAGAGATTGTGTGGTCAGATGCCGGCTCCGCCATCATACGTGCCCGCTGTGGCCTCTGAGAAAACAGACCAAATGGATTTCATAGACAGACTGAAAAACTTCCTCTTCTATGGCATGCAGGACTTCTTGTTTTATCTAGTCACCAAATTCAAGTGGGATCACTATTATTCTGAGGTCCTGGGTAAACCCACAACTATGTGTGAGACCATGGGAAAAGCAGATATCTGGCTGATAAGAACGTACTGGGATTTCGAGTATCCGCGTCCATTCCCACCTAACTTTAAGTTTGTTGGAGGACTGCACTGCAAACCTGCCAAACCCCTGTCTAAGGAAATGGAGGAGTTTGTTCAGAGCTCTGGAGATCACGGCGTCGTTGTTTTCTCATTGGGCTCCATGATTAAAAACCTGACATCGGAAAGAGCCAACACTATTGCTGCTGCTCTGGGCCAGATCCCGCAAAAGGTTGTTTGGCGTTACAGTGGGAAAACTCCAGAAACACTGGCTCCCAATACTAAAATCTACGACTGGATCCCACAGAATGATTTGCTTGGTCATCCAAAAACGAAGGCTTTCATCACTCATGGTGGCACAAATGGACTGTATGAGGCTATTTATCACGGTGTCCCGATGGTGGGTTTGCCACTGTTTGCTGATCAGCCTGATAACCTACTGCACATGAAAACCAAAGGAGCTGCTGTAGTCCTTGATATCAACACACTGGAATCCAAAGACCTGGTGGATGCTCTAAAGACTGTCTTAAATAACCCATCGTACAAGGAGAGCATCATGAGGCTGTCCAGAATCCACCACGATCAGCCGATGAAGCCGCTGGATCAGGCCGTGTACTGGATTGAGTTTGTGATGCGGAATAAAGGAGCCAAACATCTGCGAGTTCAGGCGCATGAGCTGAGCTGGTATCAGTACCACTGTCTGGATGTCGCGGCCTTCTTACTCTCCATCGCCGCTCTGATCACATTCCTCTGGGTTAAAGCATGCTGCTTCCTTTTCCGCAGATGTGTCAGGAAAACCCGTCCTGAGAGGAAAACACAGAAGAGTAAAAATGAGTGAATGCAAACTGCAGTCCAATAGTGACCAGATAATTCCCCACAGAGATGCAGTATGTGTGTCAGTGGTTGTgcaaattgtgtgtttgtgtgtattgtgAATTGAGAGtgcttttaatcaaataaatgcatgtgcatttatatgtaaataataattttttgaacattgatttatttatttttaattctgtttattcTTCTGAGCTCTACACAGAGACTCCTGCTAGTAGATTAGTGCATATTTTTGGGGAACTTTCAGACGATCAAAATCTATATAGAGCggggaaataaatattgaacacatgtTGTCATGTATTTTTCAGGGAATAATATTTCcaaaggagctgctgacatggaattgagggagattttggtaaaaacccaaacgataaagacataacaataaaacaaaacaaatctgagaaatgagttgtgtgtaataacactgacagaaggagaaagcgctgaactactgaaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0008194 UDP-glycosyltransferase activity molecular_function
GO:0015020 glucuronosyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080721-23 Predicted to enable UDP-glycosyltransferase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in liver.

Ensembl:

ensembl_id ENSDART00000034639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061358 lncRNA downstream 4778 69921129 ~ 69921988 (-) True XLOC_031687
TCONS_00062158 lncRNA downstream 71015 69849000 ~ 69855751 (-) True XLOC_031686
TCONS_00062157 lncRNA downstream 71198 69849000 ~ 69855568 (-) False XLOC_031686
TCONS_00062156 lncRNA downstream 72135 69849000 ~ 69854631 (-) False XLOC_031686
TCONS_00062155 lncRNA downstream 72162 69849000 ~ 69854604 (-) False XLOC_031686
TCONS_00062159 lncRNA upstream 12627 69960726 ~ 69962413 (-) True XLOC_031689
TCONS_00062160 lncRNA upstream 229905 70178004 ~ 70200935 (-) True XLOC_031690
TCONS_00062161 lncRNA upstream 372912 70321011 ~ 70324081 (-) True XLOC_031691
TCONS_00062162 lncRNA upstream 513379 70461478 ~ 70508199 (-) False XLOC_031692
TCONS_00062163 lncRNA upstream 515463 70463562 ~ 70482273 (-) False XLOC_031692
TCONS_00061356 mRNA downstream 2124 69907222 ~ 69924642 (-) False XLOC_031687
TCONS_00061357 mRNA downstream 3525 69908043 ~ 69923241 (-) False XLOC_031687
TCONS_00061355 mRNA downstream 122333 69795204 ~ 69804433 (-) True XLOC_031685
TCONS_00061353 mRNA downstream 210265 69708528 ~ 69716501 (-) False XLOC_031684
TCONS_00061352 mRNA downstream 218972 69702762 ~ 69707794 (-) True XLOC_031683
TCONS_00061366 mRNA upstream 591604 70539703 ~ 70625697 (-) False XLOC_031693
TCONS_00061367 mRNA upstream 656348 70604447 ~ 70625697 (-) False XLOC_031693
TCONS_00061368 mRNA upstream 1304757 71252856 ~ 71460556 (-) True XLOC_031699
TCONS_00061369 mRNA upstream 1714063 71662162 ~ 71838520 (-) False XLOC_031703
TCONS_00061370 mRNA upstream 1751794 71699893 ~ 71705191 (-) False XLOC_031705
TCONS_00061350 other downstream 270258 69656394 ~ 69656508 (-) True XLOC_031681
TCONS_00061320 other downstream 904804 69021859 ~ 69021962 (-) True XLOC_031664
TCONS_00061305 other downstream 1308677 68617958 ~ 68618089 (-) True XLOC_031655
TCONS_00061295 other downstream 1838419 68077134 ~ 68088347 (-) True XLOC_031649
TCONS_00061289 other downstream 1933694 67982831 ~ 67993072 (-) True XLOC_031645
TCONS_00061376 other upstream 2141296 72089395 ~ 72089511 (-) True XLOC_031712
TCONS_00061384 other upstream 2318360 72266459 ~ 72286113 (-) True XLOC_031719

Expression Profile

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