RNA id: TCONS_00006207


Basic Information

Item Value
RNA id TCONS_00006207
length 5295
RNA type mRNA
GC content 0.39
exon number 2
gene id XLOC_003145
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2458264 ~ 2466879 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTCAAACAGACTCAGCAAAAGCGGCTGTCCCGTCCTATTTAAAAGAGGCGCAGATGATTAAACAGGGCGCTGAGGCTCGGGTCTATCGAAGCACATTTTTGGGTCGCTCTGTGATTATTAAGGAGAGATTTCCCAAGTTATACCGCCATCCGGAAGTGGATGAGAAACTGACGCGCCGCAGAACAACACAGGAGGTGCGCTCCATACTGCGCTGCAGGAGAGCCGGCATCAGCGCACCGGTTGTGTATTTTGTGGACTACGCCACACACTGCATCTTCCTGCAGGACGTGGTGAACTCTGTGTCAGTGCGAGACCACATCAGATCGCAGCCGGACGGTCTGCAGACTCTGGCGGAGCGCATCGGTGAAGTTCTGGCTCAGATGCACGATGAAGACGTCATTCACGGAGATCTGACCACCTCCAACATGCTGCTGACCAGCGGAGGACAACAGCAAGACTTCAACCTGGTGCTCATCGACTTCGGCTTGAGCTACATCTCCGCTCTTCCTGAGGATAAAGGAGTGGATCTGTACGTCTTGGAGAAAGCTTTTCTCAGCACTCACCCCAAAACTGAGGCTTTATTCGAGAGGCTTCTGAAGAGCTACAGCAGTGCCTCTAAGAAGTCCACTGCGGTCATCAAGAAACTGGACGAAGTTCGGCTGAGAGGACGCAAGAGGTCAATGGTGGGATAGCAGTAAAGTGGTTTCAATCATTCAGGCTTAAAGGATTCGTTCATTTGCTGAATAAAAATTTCCACCATCGAAGACtctgtttcccaaccctgttcccgaAGGCACAGCAACAGAACATTTTTGATCtcaacctaatcaaacacacctgaatcaactcatcagaagaTTAGAAAAGACCCCAAAAACCTGgagttaatgggtcagataagggagacatggaaaatatgtactgttggtgtgcctccaggaacagggttgggaaacactgatctaaGATAACTGgtcaaactaaaattaaaaagtactcactatttttactcaaaaaaataagtttgctgtttgttcaaactacttatttcgCTGAAACTACACAATTCTCAAGtgattttttgggacaacttcattTGCGTCctgaataaaaatgttcatcGTCATCTAagacagtgtttcccaaccctgttcctggagacacaccaacagtacatattttggatgtctcccttatctgaaaCATTAACTTCAGAAGGTTTTATGCAAGTACGAGTAAATAGTGCTGAATGTAGATTTTTGAGTGAGCAATAGGTttaatttcttttcagctaaaaaaaataatgaaattaacatCTTTGATGCCTGGAGTAACGAACTtaaaacatattttggatgtGAACTAATCCCTGCAGTTTGATGTTGGACATTTATAAAGGTGTATTTCTTTATTGTAATGAATTTCGATTTCTAACATGTTGGTTAAACAGTGTTTTTGTGCTCATTTTAGTGTTTCTTCTGAATGGAAGTCGAGTTAAACTAAATGTAGtttaaaataaactgttgaaCCCTATTAACATGCATGAGATGTATTTCTCGCTGCATATGCAACCAATAAAGAACTGGCTTCAGAATATTGCTGGAATGTGTGTTTaatcagtaataaataaaacatgcactcactggccactttattaggtacaccgtactagtaccaggttggacccccttttgtcttcagatctgccttaatccttcatggcagagattcaacaagctactggaaatattcctcagagattttgctccatgttgacatgatagcatcacgcagttgctgcagatttgtcagctgcacatccatgatgtgaatctcgtttcaccacatcccaaagctgctctattggattgagaacaggtgactgtggaggccatttgagtacaatgaactcttcaagaaaccagtctgagatgattcacgctttatgacatgcgttatcctgctggaagtagccatcagaagatggagacactgtgctcataaagggatggacatggtcagcaacaatactcaggtaggctgtggcgttgacacgatgctcaattggtactaaatctgacccaaagtgtgccaagaaaatctcccccacaccattacacctccaccaccggtctaaaccattgatacaaggcaggatggattcatgcttgcATGTAGTTGACACCAAACTTTGACCCGACcgtccgaatgtgtcagcagataTCGAGCctcatcagaccaagcaacgtttctccaatcttctattgtccagttttggtgagcctgtgtgaattgtaggtTGGAGGTGTtgtttgttcagagatgctcttctgcagacctcgattATAACGAGTGGTTTGAGCtgctgttgtctttctatcagctggaaccagtctggccattctcctctggcatcaagacattttgcgcccacagaactgtcgctcactggatattcccCTCGGTTATGTGCACACACTGCAACActactgtgtttaaacctcttaaatggttaaacactttaaattaaatgacacttttttttttttttaagccagGGGTTGTCTTTGTCGATAACACAGAGCTAAAATAGCACAGCATTTATTTAAGTGTGTGCTTTTAtttcacaataaaaatattaacaaaacaaaacatgcattaAGAACACAAAGATCAGTGCATTTTACCTCTAActtaaatacataatataaaaaaagtctCACGTAGCAGTAAGCTGAAATAAACGAAATATAAAATCCATAAACATTTCTACTGATGGCACAGAGAAGATGCTAATCTCATGCTGAACTTAGTAGGCAAAACGGTCCAAAATCAAACGTATTGGAAAAAGTGACTCACGTATCGTGTAAGGAGTCCTAGattgcaaataaaacacaaaaggaAACGTCTGTTAATGAAGCCTGAACAAAAGATGTGTTCAAAAAGTCCTGAGGTCACGTGAAGTCTCTGTTGGGGAGGATCATGGGAGCGATCAGACTCCAGGTGTATAAAGTGAGACAGACCCAGCTGGAGGAGATCTTGACCCACACCGCCGGCCACTTACTCCTCATGGCGTTGTAGTCTGTGTCAGGACTGTGTTCACAATCAAGTGAATTAGAAACAAGATCTTAAACCTGCTGCTGAACTCATGTCTACTGATGTACGTCTGTTTAGTGGAAGCCTGTttgtgattgttttgttttttttgagtttacatctcacaGTTGTGCAAAATAAAATGCTGAATTGTGAAGCGATcaagtcttaaattttaaaatgaaaactctgaATTTTGACAAAGAGTAATGCTGGAAACTTACAGCAGGGAAATTGAGTGTTGAACATTcatctaaaggagctgttgacatggagttGAAGCAGAGTTTGGTGGAAACCCaaacaatataaacataaaaattaaaaatgagatCTGTGTAATAACAAAATGACACAAGAAGAAAGTGCTGAActtctgaaatgtgtttaatactttatataaaagcctaaagacgcctctcatataaAGAATAAAGTCatatgcattgctcaggtgtgagtttctcacagacttcaacagagtgtcaaaatcttgatgcttctgtgggtctcgtctatcaaatctgagctatattctgtattctctattgaattcagctcaggtgattggctgggccattccacagcttgattttcattctctgaaagcatctgagagtctccttggctgtgttttggatcattgtcttgctgaaatgtccaccctggtttcatcttcatcctcctgctaatgtagatgttggactgaagcagctgatcttcatttacactgaggaagggcagaggcttgctgaagaaccactgagagatttcagttgctgtctgggctttcactgccgaactacacctccctttcttcatctgTTTAATACTAATTCTCTGTCTCATgtcattttattacgcataacttcatttgcacactaattagatttgtttgcatttatagatttctttggttgtCTCCAACATCCACAATTTCAAgtaaacagcacctttagaaatgtgttttctgagaGAAATGgcgatgtgttcaatacttatttcccctacTGTAACTCAAAAGTGTCATGCAAATGTGCAATTCTGACCAATTTCAAGCCAGTTTAAATCATTTAAGCAGAGGAAACTACAatttataaaagattaaaatcacatgtaaaaaataaaaataaaagtttttacattgaattattattaaaaaggaaaaccataaagtatttatttcatttgtaccTTTGTTCTACAGTATTTATCAATGCTTATTATTGGTTTATTGCATTTTACGCAGATGAACTCCACACCAAAATCAGCCTGATCAATCTAAAATAAGGAATTCTttacaaatagagctattcatttCATCATGGTCAAATTACACTcaatatacagtcgaagtcaaaaTTAATCGCCCCcttgtgaattttcttttctgtttcaaatatttcctaaatgatgttgaacagattcaggaatttttcacagtattttctataatattttttcttctgggaaaaagtcttatttgatttatttcagctagaataaaagcagttcttaattttattgaaaccatttaaggtcaaaattattagccccccttaatctATATTTGTTTcggattgtctccagaataaaccgCTGTAATACAATGGCTTGCCGAATTACCCTAAATTTAccctacttaacctagttaaaactttaaatgtcactttaagctgaatactagtgtctttaaaaatatctagtctaatattatttactgtcatcatgacaaagacaaaataaatcagttattaaaatgagctattaaatctattagaaaatctgctctccgttaaacagcagtttgggaaaaaataaacaattaattctgacttcaactgtatatcgcagaaaaataaaacatcgcAGCTGTTTCCAGTATTGTAGAGGTTTGTGTGGTCACTCACCTGTACCAGTTGGTGAGCGTCATCATGATGTAAAGAGACGCCAGGAACAGCATGAAGTGGAAGAAAGCGTAGCTGTACTGAACCGTCTCTCGCTCATTATCTTCCATATGATGTGCTGTGGTGTTTTCTTCTGCCGCCTCTGCACTGCTTGCGGCACTTTCATCCTGAACCGTGGCATCTTTAGCCGCTAAGGTTAATTTATTCACTTGACTAGTATTGGAAGAGCGAATGCTGCCAAGAAAACATAGAAACAAAAGAGTCTCTTTATATTAAGTAGACAATACA

Function

GO:

id name namespace
GO:0070525 tRNA threonylcarbamoyladenosine metabolic process biological_process
GO:0006468 protein phosphorylation biological_process
GO:0000408 EKC/KEOPS complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
ko01001 Protein kinases
ko03016 Transfer RNA biogenesis

ZFIN:

id description
ZDB-GENE-050522-123 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and tRNA threonylcarbamoyladenosine metabolic process. Predicted to act upstream of or within phosphorylation and tRNA processing. Predicted to be part of EKC/KEOPS complex. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 4. Orthologous to human TP53RK (TP53 regulating kinase).

Ensembl:

ensembl_id ENSDART00000188341

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008515 lncRNA upstream 137909 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008514 lncRNA upstream 137909 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008380 lncRNA upstream 143478 2308218 ~ 2314786 (+) True XLOC_003140
TCONS_00008513 lncRNA upstream 145119 2308209 ~ 2313145 (+) False XLOC_003140
TCONS_00008379 lncRNA upstream 252466 2198677 ~ 2205798 (+) False XLOC_003139
TCONS_00006213 lncRNA downstream 148191 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00006224 lncRNA downstream 243678 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006228 lncRNA downstream 360674 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00008381 lncRNA downstream 463300 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 736608 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00006206 mRNA upstream 11918 2434262 ~ 2446346 (+) True XLOC_003144
TCONS_00006205 mRNA upstream 28961 2416064 ~ 2429303 (+) True XLOC_003143
TCONS_00006204 mRNA upstream 45157 2398843 ~ 2413107 (+) True XLOC_003142
TCONS_00006203 mRNA upstream 60290 2391469 ~ 2397974 (+) True XLOC_003141
TCONS_00006200 mRNA upstream 253510 2198831 ~ 2204754 (+) False XLOC_003139
TCONS_00006209 mRNA downstream 39637 2506516 ~ 2513093 (+) False XLOC_003146
TCONS_00006208 mRNA downstream 39637 2506516 ~ 2513093 (+) True XLOC_003146
TCONS_00006210 mRNA downstream 87977 2554856 ~ 2566692 (+) True XLOC_003147
TCONS_00006211 mRNA downstream 129788 2596667 ~ 2609511 (+) False XLOC_003148
TCONS_00006212 mRNA downstream 133733 2600612 ~ 2609824 (+) True XLOC_003148
TCONS_00006199 other upstream 267534 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 912033 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 928937 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1727341 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006147 other upstream 2086824 371322 ~ 371440 (+) True XLOC_003107
TCONS_00006215 other downstream 166912 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006226 other downstream 278185 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 709807 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 1032311 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1498848 3965727 ~ 3968309 (+) True XLOC_003171

Expression Profile

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