RNA id: TCONS_00062260


Basic Information

Item Value
RNA id TCONS_00062260
length 2004
RNA type mRNA
GC content 0.50
exon number 15
gene id XLOC_031779
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 3516695 ~ 3540267 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGttattgggtgaactacccctttaaatcgTTTACATCAGTGTAGATTCCCGCTTCCGCACAGGAAGTGGAATAAAAGTTGGAGCTCTAGCTCATCTAACTCGTGTCATTTTCCTTTCTATGTCCTTAACTGTGTCAAAGTTAAAGCCCCGGTGAAACACAGGCGATGACATTACGTTCGGGACATCACAGTCTATCTCAACAGCACACTCAGCAGCAACTTTAGTAGTTATGGAGAGTTTTAATTTGAAGCGACTTCATTTAGACATGAACGTCAACTGGACGCCGATGTTTGCAGCCACAGTTTGCGGCACAGGTGCGATATTTCTTTTCTGGAAATGGAGAAATAACCAGAAGATTCAGAATAAAATACTAAACGCGCGGAGAAGAAGAGATAAATCACTTGAGCAGGCTGAACAAGCGGTGCAGCGATTTAAAATACAGAACCCAGGTTTCCAGAGCAGCTCTATAGTGTCTTTGTCTTTGTCGGAGCTCACTGGGAAACTGCAGGACGGCTCTCTGCAGCCTGATGCCGTGCTTTACGCTTTCATGGAGAAGACTCTGGAGGTGAACAGGAATCTGAACTGTGGCACTGAGATGTTGATGGAGTCTGTGGCACAACTGAAAGACATGAACACTCAAAAGAAAGGCCTTCTGTATGGAGTCCCCATCAGCATCAAGGACAATTTTGGATATAAGGGTCATGATTCTTCATGTGGAGTGGTGAGTAAATTGGATCAGCCGGCGGTCATGGATAGTGTGATCGTTACAGTGCTGAAGAAGCAGGGAGCAATACCCTTCATCAAGACCAACATACCACAAGGTCTTCTCAATTATGACTGCGGTAACCCCATTTTTGGACAAACCTTAAACCCCTATAACCTCCAAAAGACATCCGGCGGCTCATCCGGAGGGGAAGGAGCTCTGATTGGAGGAGGAGGCTCCATTCTGGGCCTGGGCACTGATATTGGTGGGAGCATTCGTATCCCATCAGCCTTCTGTGGGATCTGTGGGTTCAAGCCGACAGCTAGAAGGCTAAGTACACGAGGAATTGACACTTGTGTGAAAGGCCAAAAGTCAGTTTTGTCCTCTATTGGGCCTTTGGCACGAGACGTCGAGAGCTTGGCACTGTGCATGAGGGCGCTACTCTGTCAGGACATGTTCAGCTTGGACCCCACCATCCCTCCATTACCATTCAACCAAGAGGTGTATGAGAGCTCAAAGCCCCTGAGGATTGGTTATTATGAGACAGACGGTTACCTGCAGCCGTCTCCAAGCATGGCTCGGGCCGTCAGGGAGACCAAGGAGCTGCTGGAGAGAGCGGGACACACGtttgttCCTTTCCAACCACTGCGGCTCTATAATATCTTCCATGAATTGGCTCTCAGGGGAATCTTGGGTGATGGAGGTGAAACCCTCTTCAGTCATCTGAAGGCTGGCCCCCTTGACCCCTGTCTCTGCTCTCAGCCTGTAACATTGGGCTCTCCACGCTTCATCAGGAAGATGCTTTCATTTCTGATCAAGCCTTTTTTTCCAAGGATTTCTGCAAGCTTGCACGGCACCTGTGGACTTGgGTCTGTAGCTGAATTATGGAGGCAGCATGCAAATGTTGAGGAATACATCCAGGAGGTGATAGCGGAGTGGAGGAGACTGGATGTGGATGTTTTGTTGTGTCCCATTCTCGGACCAGCCTTCAATTTCCACTACTGTGGCCGTCTTAACAGTGCTCTCAGTTACACCACCCTCTACAACCTGCTGAACTTCCCCGCCggtgtggtgtgtgtgtctgCGGTGACGGAGGACGACGAGGCTCAGCTCCGCCAGTATACTGGAGCACATGGTGACCCGTGGGACAAACTCTTCCAACAGgcagTAAAGGGTGGCGTTGGTCTCCCGGTGGCGGTTCAGTGTGTGTCTCTGCCGTGGCAGGATGAAATGTGTCTGCGCTTCATGAGGGAAGTTGAACAGctcacagccaaaaacaaacTCACCAGGAAACATTAA

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko00643 Styrene degradation
ko04723 Retrograde endocannabinoid signaling
ko04361 Axon regeneration

Ensembl:

ensembl_id ENSDART00000109576

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064796 lncRNA upstream 93962 3419776 ~ 3422733 (+) True XLOC_031776
TCONS_00064598 lncRNA upstream 896357 2617389 ~ 2620338 (+) True XLOC_031771
TCONS_00062238 lncRNA upstream 923195 2519973 ~ 2593500 (+) False XLOC_031770
TCONS_00064599 lncRNA downstream 34784 3575051 ~ 3581291 (+) True XLOC_031780
TCONS_00062270 lncRNA downstream 275782 3816049 ~ 3826125 (+) True XLOC_031787
TCONS_00064797 lncRNA downstream 287510 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00064798 lncRNA downstream 337405 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00062279 lncRNA downstream 461050 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00062259 mRNA upstream 25338 3473657 ~ 3491357 (+) True XLOC_031778
TCONS_00062258 mRNA upstream 57355 3459026 ~ 3459340 (+) True XLOC_031777
TCONS_00062254 mRNA upstream 111200 3334423 ~ 3405495 (+) False XLOC_031775
TCONS_00062262 mRNA downstream 100114 3640381 ~ 3675797 (+) True XLOC_031781
TCONS_00062263 mRNA downstream 140384 3680651 ~ 3692280 (+) True XLOC_031782
TCONS_00062264 mRNA downstream 153174 3693441 ~ 3708386 (+) True XLOC_031783
TCONS_00062265 mRNA downstream 170598 3710865 ~ 3713097 (+) True XLOC_031784
TCONS_00062266 mRNA downstream 176399 3716666 ~ 3728694 (+) False XLOC_031785
TCONS_00062248 other upstream 267225 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 350973 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 3411973 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062273 other downstream 287510 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062276 other downstream 294175 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062297 other downstream 2143914 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 2675527 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 2731600 6271867 ~ 6273477 (+) True XLOC_031808

Expression Profile

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