RNA id: TCONS_00062267


Basic Information

Item Value
RNA id TCONS_00062267
length 1261
RNA type mRNA
GC content 0.47
exon number 11
gene id XLOC_031785
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 3716666 ~ 3728694 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGTTGTGATTCTAGCAAAGATGGCTGACAATCAGGAAATGTCTCCCCTGGAGAAGAAGGTGGCGGAGCAGATTGAGTATTATTTTGGTGACCATAATCTCCCAAGAGACAAGTTTCTGAAGGAGCAGCTGCAGTTAGACGACGGATGGGTCCCTCTGGAGACCATGCTAAAATTTAATAGACTCAAAAGTCTCACGTCAGAGGAATCAGTCATTGTCGAGTCGCTGCTGAAGTCTAAAACAGGCCTGCTGGAGATCAGCGAAGACAAAACCAAAATAAGACGAGATCCGAACAAACCCCTTCCTGAGAACAACGAGGAATACAGGGACGCGCTCAAACACAAATCCATCTACATGAAAGGCTTTCCTCTTGAAACTACGCTGGATGATGTTAAAGAGTGGCTTGCTGATAAAGGCACATTTGAAAACATCTACCTGAGGAAAGGACCCCAGAAAACCTTCAAAGGATCAATCTTTGCTGTTTTGGAAACTGAAGAAGCTGCCAAGGCTTTTGTCGAGCGTGACGACATCAAAAATTTCAAAGGAAACGAGATGATCGTCATGATGAAAGATGCCtactttactaaaaagatagctGAGAGGAAGCAGAACCGTGTGGAATCTAAAGCTAAAGCCAAATGTGACAAAGAGGAAAAGCAGAAACAGGCTGAAGAAGAAGAGATGAAATCCCTGAATGAGCAGAGAGGCTGCCTGCTGAAGTTCTCTGGTGAATTGGGTCAGACCTCAAGGGAGGATTTTCACTCCGTCTTCTCTGATCACGCTCAAATCAAGTGGATTGATTTCACCAGAGGAGCTAAAGAGGGCACCATCCTGTTCCACTCCAACGCTAAAGAGGCTCTCCAGAAAGTCCGAGAGGCTCTCAACGGGGAGGATCCCAAGGTGAAGGAGCAGGCCGTTCAGTGGGAGATTCTGGAGGGAGACGTGGAGATGGAAACACTGAAGAAAATCATCGAGGATCAGCAGGAGTCAATAAACAAACGCAAAGGAGGCCGAGGAGGGTTCAGGGGTCGAGGAAGAGGACGAGGAGGCCGCAGAGACCGAGGAGGACGAGAACACACTCAGTTCAAGGGAAAGAAGACCAAGTTTGATAGCGATGAAGAGGGAGATGAAGAAAGCGCCAGTACAAAGAAGAGACCTCTCGAGTCTAACAGACAAGATAACGGAGAGCCGGTTTCCAAACAAGCCAAAAGCGAGAATGGTTCTTAATGGGGAAAGAGTTGTGGCCTTATTTTTTTGTAC

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03030 DNA replication
ko03430 Mismatch repair
ko03440 Homologous recombination
ko05322 Systemic lupus erythematosus
ko03032 DNA replication proteins
ko03400 DNA repair and recombination proteins
ko03029 Mitochondrial biogenesis
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-223 Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including digestive system; immature eye; mesoderm; musculature system; and nervous system. Orthologous to human SSB (small RNA binding exonuclease protection factor La).

Ensembl:

ensembl_id ENSDART00000184330

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064599 lncRNA upstream 136322 3575051 ~ 3581291 (+) True XLOC_031780
TCONS_00064796 lncRNA upstream 294880 3419776 ~ 3422733 (+) True XLOC_031776
TCONS_00064598 lncRNA upstream 1097275 2617389 ~ 2620338 (+) True XLOC_031771
TCONS_00062237 lncRNA upstream 1124113 2519973 ~ 2593500 (+) False XLOC_031770
TCONS_00062270 lncRNA downstream 88240 3816049 ~ 3826125 (+) True XLOC_031787
TCONS_00064797 lncRNA downstream 99968 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00064798 lncRNA downstream 149863 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00062279 lncRNA downstream 273508 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00064799 lncRNA downstream 273881 4001690 ~ 4004456 (+) True XLOC_031792
TCONS_00062265 mRNA upstream 4516 3710865 ~ 3713097 (+) True XLOC_031784
TCONS_00062264 mRNA upstream 9227 3693441 ~ 3708386 (+) True XLOC_031783
TCONS_00062263 mRNA upstream 25333 3680651 ~ 3692280 (+) True XLOC_031782
TCONS_00062262 mRNA upstream 41816 3640381 ~ 3675797 (+) True XLOC_031781
TCONS_00062261 mRNA upstream 191505 3516926 ~ 3526108 (+) True XLOC_031779
TCONS_00062268 mRNA downstream 3034 3730843 ~ 3813374 (+) False XLOC_031786
TCONS_00062269 mRNA downstream 81537 3809346 ~ 3813374 (+) True XLOC_031786
TCONS_00062271 mRNA downstream 99942 3827751 ~ 3862112 (+) False XLOC_031788
TCONS_00062272 mRNA downstream 99942 3827751 ~ 3862113 (+) False XLOC_031788
TCONS_00062275 mRNA downstream 100751 3828560 ~ 3863452 (+) False XLOC_031788
TCONS_00062248 other upstream 468143 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 551891 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 3612891 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062273 other downstream 99968 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062276 other downstream 106633 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062297 other downstream 1956372 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 2487985 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 2544058 6271867 ~ 6273477 (+) True XLOC_031808

Expression Profile

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