Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062273 |
| length | 585 |
| RNA type | processed_transcript |
| GC content | 0.48 |
| exon number | 4 |
| gene id | XLOC_031788 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 3827751 ~ 3863452 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042136 | neurotransmitter biosynthetic process | biological_process |
| GO:0009449 | gamma-aminobutyric acid biosynthetic process | biological_process |
| GO:0019752 | carboxylic acid metabolic process | biological_process |
| GO:0030170 | pyridoxal phosphate binding | molecular_function |
| GO:0016829 | lyase activity | molecular_function |
| GO:0016831 | carboxy-lyase activity | molecular_function |
| GO:0004351 | glutamate decarboxylase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030909-3 | Predicted to enable glutamate decarboxylase activity and pyridoxal phosphate binding activity. Acts upstream of or within gamma-aminobutyric acid biosynthetic process and neurotransmitter biosynthetic process. Is expressed in nervous system and neural tube. Used to study epilepsy. Human ortholog(s) of this gene implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia. Orthologous to human GAD1 (glutamate decarboxylase 1). |
| ensembl_id | ENSDART00000140419 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00062270 | lncRNA | upstream | 1652 | 3816049 ~ 3826125 (+) | True | XLOC_031787 |
| TCONS_00064599 | lncRNA | upstream | 246486 | 3575051 ~ 3581291 (+) | True | XLOC_031780 |
| TCONS_00064796 | lncRNA | upstream | 405044 | 3419776 ~ 3422733 (+) | True | XLOC_031776 |
| TCONS_00064598 | lncRNA | upstream | 1207439 | 2617389 ~ 2620338 (+) | True | XLOC_031771 |
| TCONS_00062238 | lncRNA | upstream | 1234277 | 2519973 ~ 2593500 (+) | False | XLOC_031770 |
| TCONS_00064798 | lncRNA | downstream | 39444 | 3877672 ~ 3879215 (+) | True | XLOC_031790 |
| TCONS_00062279 | lncRNA | downstream | 163089 | 4001317 ~ 4004456 (+) | False | XLOC_031792 |
| TCONS_00064799 | lncRNA | downstream | 163462 | 4001690 ~ 4004456 (+) | True | XLOC_031792 |
| TCONS_00064800 | lncRNA | downstream | 679930 | 4518158 ~ 4520247 (+) | True | XLOC_031798 |
| TCONS_00064600 | lncRNA | downstream | 1360041 | 5198269 ~ 5399444 (+) | True | XLOC_031802 |
| TCONS_00062268 | mRNA | upstream | 14403 | 3730843 ~ 3813374 (+) | False | XLOC_031786 |
| TCONS_00062269 | mRNA | upstream | 14403 | 3809346 ~ 3813374 (+) | True | XLOC_031786 |
| TCONS_00062266 | mRNA | upstream | 99083 | 3716666 ~ 3728694 (+) | False | XLOC_031785 |
| TCONS_00062267 | mRNA | upstream | 99968 | 3717613 ~ 3727809 (+) | True | XLOC_031785 |
| TCONS_00062265 | mRNA | upstream | 114680 | 3710865 ~ 3713097 (+) | True | XLOC_031784 |
| TCONS_00062277 | mRNA | downstream | 25812 | 3864040 ~ 3875115 (+) | True | XLOC_031789 |
| TCONS_00062278 | mRNA | downstream | 96510 | 3934738 ~ 3956580 (+) | True | XLOC_031791 |
| TCONS_00062280 | mRNA | downstream | 195604 | 4033832 ~ 4146073 (+) | False | XLOC_031793 |
| TCONS_00062281 | mRNA | downstream | 246511 | 4084739 ~ 4146073 (+) | True | XLOC_031793 |
| TCONS_00062284 | mRNA | downstream | 322351 | 4160579 ~ 4176841 (+) | False | XLOC_031794 |
| TCONS_00062248 | other | upstream | 578307 | 3218363 ~ 3249470 (+) | True | XLOC_031772 |
| TCONS_00062246 | other | upstream | 662055 | 3165608 ~ 3165722 (+) | True | XLOC_031773 |
| TCONS_00062191 | other | upstream | 3723055 | 103361 ~ 104722 (+) | False | XLOC_031731 |
| TCONS_00062297 | other | downstream | 1845953 | 5684181 ~ 5684295 (+) | True | XLOC_031803 |
| TCONS_00062300 | other | downstream | 2377566 | 6215794 ~ 6215910 (+) | True | XLOC_031807 |
| TCONS_00062305 | other | downstream | 2433639 | 6271867 ~ 6273477 (+) | True | XLOC_031808 |
| TCONS_00062321 | other | downstream | 2993818 | 6832046 ~ 6832621 (+) | True | XLOC_031815 |
| TCONS_00062324 | other | downstream | 3041699 | 6879927 ~ 6880049 (+) | True | XLOC_031817 |
