RNA id: TCONS_00062280


Basic Information

Item Value
RNA id TCONS_00062280
length 3653
RNA type mRNA
GC content 0.55
exon number 22
gene id XLOC_031793
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4033832 ~ 4146073 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAAATGGTTAATATTCATGAGCAAACCTTCCTTATTGGCAGGTTAGCGAGCAAAGGAATGACgagatcattaatattcatgagcagaGCGGTAGCAGCAGTAGTACTGTAGTAGAAAGTAGATTCGCCCCGGTGTGAGGCGGTGCGGTCGGCGAGAGCGCGCAGAAACCTTCACAGATCTAAACAGAGTCTTCTGGACATCCCACACAGCTGAAAATACTCCTGAATTTACCAGACTGCATAGGATTCAGATCTGAAGTGTATCCGATGCGCTCCTGAGGAATGAGCCCTTGTTGACAGCACACTCCTGGGACCTTCTCACTCTTCTGATACTGGAGTGTTTCTTGTGGTAATAATGGCAGCGATGGTGTTCTGGGCCGGATCACTGTCTTTCGTCGGACTGGTCATCTTTCACCTCCTCTTTCTGCCTGTGGTCACGTCACAGACACCATCATCACCCCCAGACACCCCTGACCCGCAGCCTGAAGAGTGCCGGAGAAAAATGCACCCTGTTACCTCCTACACAGCGTTGAGTCCGTGGCTCTTCTCGTTCTCTGTGCCTGGAGTGAACGACTACTCACCACTCACACTCGACCTCAGCAGGAGCCAGCTGATTGTGGGAGCCAGGAATCATCTCTTCCGGCTGAGTTTGAGTAACATCTCTCTTCTGCAGGCCACAGAATGGGGTGTTGACGAAACTACCAGGAGATCCTGCCAGAGCAAAGGAAAGACCGAGGACGAGTGCCAGAATTATGTGCGAGTCCTCCTGCTGAACGGCAGTCGTTTGTTCACCTGCGGTACGAACGCCTTCATGCCCGTCTGTGTGACGCGTCCCGTGACGGACATCAGCAGCGTTCTGGACTCCATCAGCGGTGTGGCTCGCTGTCCCTACGATCCTCGACACAACTCCACAGCCATGATCACAGAGAGCGGAGAGGTGTACGCCGCCACTGTGACCGATTTCTCTAGCCGGGACCCCATCATTTACCGCAGCCTGGGGAACATGCCGCCTCTGCGCACCGCACAGTACAACTCTAAATGGCTCAACGATCCTCACTTCATCTCGGCGTATGAGGTGAGCCGTTTCACATACGTGTTTCTGCGAGAGAACGCAGTGGAGCAGGATTGTGGGAAGACGGTTTTCTCTCGCGTGGCTCGCGTGTGTCAGAACGATATCGGCGGTCGCTTCCTTCTGGAAGACACGTGGACCACATTCATGAAGGCCCGGCTAAACTGCTCACGATCTGGAGACGTTCCCTTCTACTACCATGAGCTGCAGAGCACTTTCTATTTGCCCGAACAAGACCTCATCTACGGGGTCTTCACCACCAATGTGAACAGTATTGCTGCGTCAGCCGTGTGTGCGTTTAACCTCAGTGCCATCACTCAGGCCTTTAACGGGCCTTTCCGCTATCAGGAGAACCCTCGCACCAGCTGGCTGTCCACTCCAAACCCCGTCCCAAACTTCCAGTGCGGGACGGTGAATGATTCGGGGCCGGGTGCTAATCTGACAGAGCGCAGTCTTCAAGACGCCCAGCGGCTCTTTCTGATGAGCGACGTGGTTCAGCCCATCTCCACAGACCCGCTGGTCATGCAGGACAACATCCGCTTCTCCAAACTGGCGGTGGACATCGTTCAGGGCAGAGACACGCTTTACCACGTCATGTACATCGGCACAGAATATGGCACCATCATCAAGGCCTTGTCCACTAATAATAAGAGTCTGCGTGGATGTTATTTGGAGGAGATGAACATTCTGCCGGGAAACAAGCAGGAGCCCATCCTGAACCTGCAGATTCTGCACAGCGATAGATCTCTGTTTGTGGGGCTTCCCAGCAGAGTGTTGAAGATCCCTTTGGAAAGATGCTCTAACTACATCACTGAACAGGATTGTCTGGGTGCCAGGGATCCGTACTGCGGCTGGGACCGTAAAGAGAAGCGCTGCACCACCATTGAGGACAGCTCCAACATGAGCCAATGGAGCCAGGACATCACAAAGTGCCCTGAGAGGAACCTCACTCAAGATGGCGGCTTTAGTGATTGGTCAACATGGCAGGCTTGTAACCATGATGACGGAGGGGAAGGCATCAGCACATGCCAGTGTCGCACCCGGGCCTGCGATCACCCTCGACCCCAGTGTGGAGGACTAAAGTGTGTCGGGGCTAATATAGAGGTGGCCAACTGCTCCAGgaaTGGAGGCTGGACACCCTGGTCATCCTGGGCCGAGTGCAGCACCAGCTGTGGGATTGGGTTTGAGGTCCGTCAGCGATCCTGTAACAATCCTTCACCTCGACACGGAGGACGCGTGTGTGTAGGCCAGGCCCGAGAGGAGAGACTGTGTAATGAGAAGAATCCATGTCCTGTCCCGATGTCCTGGGTCTCCTGGAGCGCCTGGTCCAAATGTAGCGTGGCCTGCGGTGGTGGAGTCCAATCCCGCGTTCGAACCTGCGAGAATGGCAACACGTGTCCTGGATGCCCTCTGGAGTACAGAGCGTGTAATTTGGACTCGTGTGCTGAAGTGAGGCGAACGACACCGTGGACCCCCTGGTATCCTGTTAATGTGACCCAGCTGGGAGCGCGGCAGGAGCAGAGGGTCCGATATACCTGTAGAGCTCTGCTGGCAGACCCTCATGACTTACAGCTCGGCAAACGCAAGATAGAGACACGCCTCTGTCCCACCACTGACGGAGCTGCTGCCTGCGAGACTGATGgtCTGGTTGAGGATTTGTTGAGAATGGGTCGACCTGTAACACGAGTGCAAGGAGCCGCCTGGGCATTATGGGAAACCTGGTCTACATGTTCAAAAGAATGTTCCAAAGGCTTCCGCACACGCAAACGCTCCTGTGCCGCACCGGATGGCAAGAGCACACCGTTCGCCTGCAGCGGAGCCCCGGTCGAGTATCAGGACTGCAACACTCAACCCTGCCCAGTGAAGGGGGCGTGGTCATGCTGGTCTTCCTGGTCTCAGTGTTCTACTTCCTGTGGTGGCGGTCATCACCAGCGCTCCCGTTCCTGCTCGAACCCTGCGCCGGCTTATTCTGGAGACATCTGCATCGGCCTGCACACAGAGGAGGCGCTCTGTAACACACACGAGTGTGAAGGTGGGTGGGGGGCGTGGTCAGAGTGGGCAGAGTGTAATGGGGAGGGGCTTCAGCTCCGGGCTCGTACATGTGAAATAAGCCCCGCCTCCTGTCTTGGAAACTCCACAGATCAGAGACAGTGTCGGCCCAATGAGAGCGCagTGCTGTCAAAAGGACAGAAGAGGAGCACAAACTGTGGAGGGTTTTCTCTGTTCCACCTGGTTCTGACTGGTGCATGTTGTTTTCTGGGAGCCGTTTTACTCTCCATCCTGGTCTATGTGTACTGTCAGAGACTCCGCAAACCTCCGCAAGAATCTGCAGTCATCCATCCCAGCACCCCAAACCATCTCCACTATAAAGACAACAGCTGCGCGCCCAAGAACGATTTATACACACCCATGGAGTTCAAGACTCTCAATAAGAACAACCTGCTTCCACCAGATGAAAGCTGCAACTTCTTCCCATCGCCCTTACCACAGACCAACGTCTACACCACCACATATTACCCGTCTCCGCTGGGCAAATACGACTTCCCTTCAATGGATTCCCCCTGCAGCTTCATGCACAGCTGA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0048843 negative regulation of axon extension involved in axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0045499 chemorepellent activity molecular_function
GO:0030215 semaphorin receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-778 Predicted to enable chemorepellent activity and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to act upstream of or within cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SEMA5B (semaphorin 5B).

Ensembl:

ensembl_id ENSDART00000159952

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062279 lncRNA upstream 29376 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00064799 lncRNA upstream 29376 4001690 ~ 4004456 (+) True XLOC_031792
TCONS_00064798 lncRNA upstream 154617 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00064797 lncRNA upstream 183590 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00062270 lncRNA upstream 207707 3816049 ~ 3826125 (+) True XLOC_031787
TCONS_00064800 lncRNA downstream 372085 4518158 ~ 4520247 (+) True XLOC_031798
TCONS_00064600 lncRNA downstream 1052196 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064801 lncRNA downstream 1792392 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00064802 lncRNA downstream 1792392 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00062298 lncRNA downstream 1792404 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00062278 mRNA upstream 77252 3934738 ~ 3956580 (+) True XLOC_031791
TCONS_00062277 mRNA upstream 158717 3864040 ~ 3875115 (+) True XLOC_031789
TCONS_00062275 mRNA upstream 170380 3828560 ~ 3863452 (+) False XLOC_031788
TCONS_00062274 mRNA upstream 170380 3828560 ~ 3863452 (+) False XLOC_031788
TCONS_00062272 mRNA upstream 171719 3827751 ~ 3862113 (+) False XLOC_031788
TCONS_00062284 mRNA downstream 14506 4160579 ~ 4176841 (+) False XLOC_031794
TCONS_00062283 mRNA downstream 14506 4160579 ~ 4176841 (+) False XLOC_031794
TCONS_00062282 mRNA downstream 14506 4160579 ~ 4176841 (+) True XLOC_031794
TCONS_00062286 mRNA downstream 83287 4229360 ~ 4250154 (+) False XLOC_031795
TCONS_00062285 mRNA downstream 83287 4229360 ~ 4250154 (+) True XLOC_031795
TCONS_00062276 other upstream 183590 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 195604 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 784362 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 868110 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 3929110 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062297 other downstream 1538108 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 2069721 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 2125794 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062321 other downstream 2685973 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 2733854 6879927 ~ 6880049 (+) True XLOC_031817

Expression Profile

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