RNA id: TCONS_00062283


Basic Information

Item Value
RNA id TCONS_00062283
length 3150
RNA type mRNA
GC content 0.51
exon number 19
gene id XLOC_031794
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4160579 ~ 4176841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGTCGTTTCTGACTGAAAATACAGTATGTTTGTTCTTTAATAtctggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgttactcTGTATGTGAGCAAAATTCAGAGTATGGGACAGGTCACGATTTTTCTTTACTTCTTATAATACCTCTTGTTcttgtaaaattaaagtaaaaaccgATTTTGTTATGCAGACCTGGCAACCCTGTATAGAACCCACATAACAACGCTCAGGTAGCCGACTAGTTAATTGGCGCCAACTTTCCTGCAGGCAAACGCTTCTCAAGTTTTTCCTCAGAAAAATGTATCATGCGTATTTTAAGACGTTTAAATTGTAAGTTAAACTTaactatttaatttatgtatgttATAAGCGTTTTAAATTGTAACTTTATTCTGTCACTTGCGTATGTTGTCGCGCAAATCATGAAGGGATGCACACGAGGCCTGATTTTCTCCCCAAACCTGTTCGGTTAGTGAGTGTCTCACCCACAGCCGGTCAAACTGGAGAGACAGACACTCACAGCTGGAGCACTTACACTGAGGAAACtttattaagttaatttgttttatcTCGTTTGACTTTACACCCTCAAGATGAGTGGTCGCCTTTGGACCGAGGAACAGTTCAACTGTCCAGTCTGTTTGGATCTTCCAACCGACCCCGCGACCATCCCTTGCGGCCACAGTTACTGCATGGACTGCATTGCGGATTATTGGAATAACGAGGGAAGGAAAAACGGCTCCTACAGTTGTCCTGAATGCCGGCAGACCTTTAACCCTCGTCCCACTCTCTGCCGGAACACAATGCTGGCCGAAGCTGTGGAGCAGCTCCGCCGCGGTACCCTCAGCACCGCAGGCCGCGAGTCCATCAAGAGCGCGCGGCGAGCAGCAAACTCCGCGTACGAGAAAGCAAACAAAGCCACCAAAGCCACTCGGAAAAAGCTGCCGGGTTCAGCCGTGCCATGTGACCGCTGCCCGGAGCCCAAAGCAGCCGTGAAGACATGTTTGGTGTGCATGGCCTCGTTCTGCGAGACTCACCTGAAGCCCCACAACACGCAGGAGAAGCTGAAGAGCCACGAGCTGATCGCGCCCACCGGAGACCTGAGCCAGAAGATCTGCCCCGAGCACAAGTATCTGCAGGAGTTCTTCTGCCGCTCCTGCCAGATGTTCGTCTGCTGGCTCTGCACCAGCAACCAGCACAAGGGCCACGAAAGTGTGTCCACACAGGCCGAGAGGTCAGACAAACAGAAAGAGCTGGGCGCAGTTCTGTCAGAGAACCATCAGAGGCTccaggacagagagagagagctgaaagACATGAAGAAAGTCGTAGACACGCTCACGCGCTCCTCAGACATGGTGCGAGACGATGCGGATGCTGTCCTCTCTGAGCTCCAGGAGTCAGTGCAGCGGATGCTGGATCTGCTGCTGGATGTGATGGTCTCCAGTGGGCAGGAGAAACTCACAGAGGCCCAGGAAGTGGTCAACAAACTGGAGGCCGAAGTCAAACAGCTGAAGAGAAAAGACGGAGAGCTGAAGGAGATCATCAACTGTCCTGACAATATACACTTTCTAAAGACATATCAGACTCTGTGTTGTCCGCTGGAGGCAGGAGAACTGGGAACTGTGACCGCCAACCCTGAAGCCACCTTTGATGCCGTCAGGAGCGTCATTGTCCAGTTTAGGGAGAGAGTGGAGGAGATGTGTGACCAGGAGCTGGACAAGATCAACAAGACcgTCTACAACACAACAGCGTTCACAGTGGCAGAACGAAACGGGCAGAAAACTGGCATCATGAAACTATTTTCTGGGAAGGGAACCAGAGCTGGTCGTGCACAAGGACCTCCTCCACTGCCGTCAGTAAGCACACGAGGATCTGtcaacacacgcacacaagtcAGCAGAACCAGTGAGCCAAGAGCTAACAGAAGTATTACGAACCCTCAAAGATCATCAAGATCGCCGAGAGAGGAGCAAAACGACACCAACAGAAACCAAAATGCAAGGACACAAAGTGAAACACAGAGAAGAGAAGAAAGAGAAAGCAATGATGCAGACATCAGGAGTTTAAATTCAGTGAGATCAAGAGGGAGAGCGAGAGGAGAAAACAGAGATCAGGAAAGTGAAAATCAGACCTCTCAAAGACGTCAGAGTACACAGAGCAGAAGTACACGAGATGAAGAACAAGCAGACCGCTGGAGTTTGAGTTCAGTCAGATCGAGACTGAGGAGAGAGGATAAAGAACCAGTGAATGGAGGATCTCAGAGTCCCTCACAGCAAAGATCAAACCCTGCAGACAGACAGCAGACAGCCAGACAATCGGACAGATGGAGTCTGAGCTCTCTCTTACCCAGAAACAGGAGGAAGAAACAGGACACAGGGGGAGAGCCAACAGAAGTGAATCCTGCTCTGTTCCTGGACTCACCTACAGACAATCCCTTCATCAATCCAGCTTTCCCTACATTGCGGGAGATTAACATTGACAGCATTCAGGCTGCAGAGCCCAGAAGCAGAGAAGAGTTCCTGCAGTATGCTTGTAATCTGACTCTGGACCAAACCACAGCCCACCGCCGTCTGCTAGTGTCTGATGGAGACTCGGTGGCCACCCTGCAGCAGACCACACAGCCATACCCGGACGTCCCGCAGCGCTTCGATGGCTGGACGCAGGTGCTCTGTCTGCAGCCGCTTACCTCTGACCGCTGCTACTGGGAGGTAGAGTGGAGGGGGCGAGGCTCATCTGTGGGCGTGGTCAGTGGGTCCATGCCTCGCAAAGGGGCGGATTCGAGGGCGGGGCTTGGGTATAACAGCCAATCATGGAGTTTGGAGCTGTCTGACATGTGCTGCGCAGCCATGCACGCTAATCAGAAGGTGGAGATCCCTGTGACCTACAGCCCTCGTGTCGGGGTGTTCCTGGACAGGAGCGCAGGGACTCTGAGTTTCTATAGCGTGGATGACGAGCTGCTGCCTCTTTATAAGTTTCAGGGCTCGTTCCCGCAGTCGCTGTATGCTGCGTTCGGGGTGGGCTGTGGCGTCGGGGTCGGCCTGGATTTTGCCATGGGGCAGTTCAGCTCCACTTCAGACAGCATTAAAATATGTCCCTTGTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040914-87 Predicted to enable zinc ion binding activity.

Ensembl:

ensembl_id ENSDART00000111817

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062279 lncRNA upstream 156123 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00064799 lncRNA upstream 156123 4001690 ~ 4004456 (+) True XLOC_031792
TCONS_00064798 lncRNA upstream 281364 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00064797 lncRNA upstream 310337 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00062270 lncRNA upstream 334454 3816049 ~ 3826125 (+) True XLOC_031787
TCONS_00064800 lncRNA downstream 341317 4518158 ~ 4520247 (+) True XLOC_031798
TCONS_00064600 lncRNA downstream 1021428 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064801 lncRNA downstream 1761624 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00064802 lncRNA downstream 1761624 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00062298 lncRNA downstream 1761636 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00062280 mRNA upstream 14506 4033832 ~ 4146073 (+) False XLOC_031793
TCONS_00062281 mRNA upstream 14506 4084739 ~ 4146073 (+) True XLOC_031793
TCONS_00062278 mRNA upstream 203999 3934738 ~ 3956580 (+) True XLOC_031791
TCONS_00062277 mRNA upstream 285464 3864040 ~ 3875115 (+) True XLOC_031789
TCONS_00062274 mRNA upstream 297127 3828560 ~ 3863452 (+) False XLOC_031788
TCONS_00062286 mRNA downstream 52519 4229360 ~ 4250154 (+) False XLOC_031795
TCONS_00062285 mRNA downstream 52519 4229360 ~ 4250154 (+) True XLOC_031795
TCONS_00062287 mRNA downstream 78478 4255319 ~ 4365080 (+) False XLOC_031796
TCONS_00062288 mRNA downstream 122323 4299164 ~ 4365331 (+) True XLOC_031796
TCONS_00062289 mRNA downstream 194094 4370935 ~ 4403253 (+) False XLOC_031797
TCONS_00062276 other upstream 310337 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 322351 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 911109 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 994857 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 4055857 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062297 other downstream 1507340 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 2038953 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 2095026 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062321 other downstream 2655205 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 2703086 6879927 ~ 6880049 (+) True XLOC_031817

Expression Profile

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