RNA id: TCONS_00064800


Basic Information

Item Value
RNA id TCONS_00064800
length 880
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_031798
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 4518158 ~ 4520247 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACTTTTAACATCAAAAAGTTTGAAcagCCCAGACACATAATGGATGATTCCAGAACCATGATGCTAAATGTAAAGAACCGGATGCCTCTCCGACTTTTAAAGGGCAGGGTTGTGAAAGGGCAATGAGCGGTGTCTGAGCCGTGGAGGGGCGTCAGCTGCGGAGAGAGACTGGAGGCTCAGGAAAGGGCCCCGCGGACAGCAGGGGCCCCTCATCTCCATGACACACTCCCTGGCACCGCAGCGATCGCGGTCAGGGGCCACGCTAATCAATACATGAAGCCTGCAGGAGTGCGGGGGGAAAATGTCTTAATGTCCTCGAGAAGTGCACGACTGCAGGTTACACTCATTCTGGCTTAGTGATGCAAAAGggatgatgctgatgatgatgctggtgtgtgtgtgtgtgtgtgtatgtacaggtTTTGGTGATTTACGAGGACAGGTTTTAAGATAGTGACATTGGTATGACCTAGATGTAATCTATacagtggtttatgaggactttcATAATGTCCTTGTAaatcaaaatgcttaaaaatcatacttaaagaTATGGTTAAGATCTGAGCTACAGCTGATGATAAAATTTCCATGTATTTTACTCCAAAAATAGGCAGGATTTAgaataaatgtcttattttgtataatttgtttCTCTGTTTCTTGAACGCTCTACTTTATTTcatgatttcttttttaaactcCTTTTTATACCCCATTTTAAAGAGACGGTAGCAGGTTTTTACTATGGAAAATTGATTACGCATATTAACAGTTTCTCTATGTTTTGTATTAAGACATGTGTATGACCTAGTTTTACTAGTTTAGACTTTcctgatgtccttgtaattcaaaacgcTTTAAAATCATACACAAAGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062279 lncRNA upstream 513702 4001317 ~ 4004456 (+) False XLOC_031792
TCONS_00064799 lncRNA upstream 513702 4001690 ~ 4004456 (+) True XLOC_031792
TCONS_00064798 lncRNA upstream 638943 3877672 ~ 3879215 (+) True XLOC_031790
TCONS_00064797 lncRNA upstream 667916 3827777 ~ 3850242 (+) False XLOC_031788
TCONS_00062270 lncRNA upstream 692033 3816049 ~ 3826125 (+) True XLOC_031787
TCONS_00064600 lncRNA downstream 678022 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064801 lncRNA downstream 1418218 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00064802 lncRNA downstream 1418218 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00062298 lncRNA downstream 1418230 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00064803 lncRNA downstream 1564989 6085236 ~ 6086132 (+) True XLOC_031805
TCONS_00062289 mRNA upstream 114905 4370935 ~ 4403253 (+) False XLOC_031797
TCONS_00062290 mRNA upstream 116911 4371137 ~ 4401247 (+) False XLOC_031797
TCONS_00062291 mRNA upstream 116913 4387150 ~ 4401245 (+) True XLOC_031797
TCONS_00062288 mRNA upstream 152827 4299164 ~ 4365331 (+) True XLOC_031796
TCONS_00062287 mRNA upstream 153078 4255319 ~ 4365080 (+) False XLOC_031796
TCONS_00062292 mRNA downstream 8384 4528631 ~ 4536338 (+) True XLOC_031799
TCONS_00062293 mRNA downstream 19706 4539953 ~ 4543005 (+) True XLOC_031800
TCONS_00062295 mRNA downstream 352636 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062294 mRNA downstream 352636 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062296 mRNA downstream 352641 4872888 ~ 4877176 (+) True XLOC_031801
TCONS_00062276 other upstream 667916 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 679930 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 1268688 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062246 other upstream 1352436 3165608 ~ 3165722 (+) True XLOC_031773
TCONS_00062191 other upstream 4413436 103361 ~ 104722 (+) False XLOC_031731
TCONS_00062297 other downstream 1163934 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062300 other downstream 1695547 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062305 other downstream 1751620 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062321 other downstream 2311799 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 2359680 6879927 ~ 6880049 (+) True XLOC_031817

Expression Profile

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