RNA id: TCONS_00062301


Basic Information

Item Value
RNA id TCONS_00062301
length 668
RNA type mRNA
GC content 0.51
exon number 6
gene id XLOC_031808
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6270686 ~ 6273519 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGCAGCCCTGCAGCTCTGAAGAGCACGTTGAACCCTCTGAAGGACCCTTTTCGGTTTCCGCCATCTAAGAGCTGGTGGTGGATTGAGCATCAAGATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAGCCCTCTGATACTATTGAAAATGTCAAGGCAAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGAACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTTCATCTGGTGCTGAGGCTGCGTGGTGGCgcaaagaagaggaagaagaagtcCTACACCACCCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTCAAGCTCGCTGTGCTGAAATACTACAAGGTTGACGAGAATGGCAAGATCCACCGTCTGCGCCGCGAGTGCCCTGCAGATGAGTGCGGAGCCGGGGTGTTCATGGCCAGCCACTTCGACCGTCATTACTGCGGAAAGTGCTGTCTGACCTACTGCTTCAACAAACCAGAGGACAAGTAGAGTACAGTCCTGACCAACATGCTCTGTGTCACACATGAGGCTGTCTGTGCTGGAGTTTGTACTTTGTAAATAAAATTGTGGCTCGCCACATTCAAAAATCAA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0031386 protein tag molecular_function

KEGG:

id description
ko03010 Ribosome
ko04120 Ubiquitin mediated proteolysis
ko04137 Mitophagy - animal
ko05171 Coronavirus disease - COVID-19
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05131 Shigellosis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03011 Ribosome
ko04121 Ubiquitin system
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-10018 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

Ensembl:

ensembl_id ENSDART00000129530

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064803 lncRNA upstream 184554 6085236 ~ 6086132 (+) True XLOC_031805
TCONS_00064802 lncRNA upstream 288828 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00064801 lncRNA upstream 289327 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00062298 lncRNA upstream 308731 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00064600 lncRNA upstream 871242 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064804 lncRNA downstream 445397 6718916 ~ 6741408 (+) True XLOC_031811
TCONS_00062311 lncRNA downstream 513119 6786638 ~ 6787082 (+) False XLOC_031812
TCONS_00064805 lncRNA downstream 513119 6786638 ~ 6788943 (+) False XLOC_031812
TCONS_00062312 lncRNA downstream 513516 6787035 ~ 6788943 (+) False XLOC_031812
TCONS_00062313 lncRNA downstream 516140 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00062299 mRNA upstream 33097 6215042 ~ 6237589 (+) True XLOC_031806
TCONS_00062295 mRNA upstream 1286443 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062294 mRNA upstream 1286443 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062296 mRNA upstream 1393510 4872888 ~ 4877176 (+) True XLOC_031801
TCONS_00062293 mRNA upstream 1727681 4539953 ~ 4543005 (+) True XLOC_031800
TCONS_00062306 mRNA downstream 217494 6491013 ~ 6541519 (+) True XLOC_031809
TCONS_00062307 mRNA downstream 388960 6662479 ~ 6666426 (+) True XLOC_031810
TCONS_00062308 mRNA downstream 505595 6779114 ~ 6795988 (+) False XLOC_031812
TCONS_00062309 mRNA downstream 505595 6779114 ~ 6795996 (+) False XLOC_031812
TCONS_00062310 mRNA downstream 507354 6780873 ~ 6796687 (+) False XLOC_031812
TCONS_00062300 other upstream 54776 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 586391 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062276 other upstream 2420444 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 2432458 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 3021216 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062321 other downstream 558527 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 606408 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062341 other downstream 1179836 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 1192754 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 1226609 7500128 ~ 7505016 (+) False XLOC_031829

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU142274 True 597 lncRNA 0.48 6 CI01000024 6885162 ~ 6888157 (-)
rainbow trout (Oncorhynchus mykiss) TU98157 True 536 lncRNA 0.49 6 NC_048565.1 79209868 ~ 79212501 (+)
rainbow trout (Oncorhynchus mykiss) TU142274 False 548 lncRNA 0.41 2 NC_048566.1 22636042 ~ 22636625 (-)
bowfin (Amia calva) TU98157 True 320 lncRNA 0.53 1 CM030129.1 18450490 ~ 18450809 (+)