RNA id: TCONS_00062302


Basic Information

Item Value
RNA id TCONS_00062302
length 721
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_031808
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6270686 ~ 6273519 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTTTCGGTTTCCGCCATCTAAGAGCTGGTGGTGAGTTACTGCTACGAACAAATAGTAACGAAATAAATGTGATTTTGCTCATATATTGCTTTAAAAACGTTCCATAAACATTCAACACTGTTTTATGCACAGGTGGATTGAGCATCAAGATGCAGATCTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAGCCCTCTGATACTATTGAAAATGTCAAGGCAAAGATTCAAGACAAGGAAGGAATCCCTCCTGATCAGCAGAGGTTGATCTTCGCTGGTAAGCAGCTGGAGGATGGACGAACCCTGTCCGACTACAACATTCAGAAGGAGTCCACACTTCATCTGGTGCTGAGGCTGCGTGGTGGCgcaaagaagaggaagaagaagtcCTACACCACCCCCAAGAAGAACAAGCATAAGAGAAAGAAGGTCAAGCTCGCTGTGCTGAAATACTACAAGGTTGACGAGAATGGCAAGATCCACCGTCTGCGCCGCGAGTGCCCTGCAGATGAGTGCGGAGCCGGGGTGTTCATGGCCAGCCACTTCGACCGTCATTACTGCGGAAAGTGCTGTCTGACCTACTGCTTCAACAAACCAGAGGACAAGTAGAGTACAGTCCTGACCAACATGCTCTGTGTCACACATGAGGCTGTCTGTGCTGGAGTTTGTACTTTGTAAATAAAATTGTGGCTCGCCACATTCAAAAAT

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0016567 protein ubiquitination biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031625 ubiquitin protein ligase binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0031386 protein tag molecular_function

KEGG:

id description
ko03010 Ribosome
ko04120 Ubiquitin mediated proteolysis
ko04137 Mitophagy - animal
ko05171 Coronavirus disease - COVID-19
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05131 Shigellosis
ko05012 Parkinson disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03011 Ribosome
ko04121 Ubiquitin system
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-10018 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a).

Ensembl:

ensembl_id ENSDART00000156859

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064803 lncRNA upstream 184600 6085236 ~ 6086132 (+) True XLOC_031805
TCONS_00064802 lncRNA upstream 288874 5938465 ~ 5981858 (+) False XLOC_031804
TCONS_00064801 lncRNA upstream 289373 5938465 ~ 5981359 (+) False XLOC_031804
TCONS_00062298 lncRNA upstream 308777 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00064600 lncRNA upstream 871288 5198269 ~ 5399444 (+) True XLOC_031802
TCONS_00064804 lncRNA downstream 445400 6718916 ~ 6741408 (+) True XLOC_031811
TCONS_00062311 lncRNA downstream 513122 6786638 ~ 6787082 (+) False XLOC_031812
TCONS_00064805 lncRNA downstream 513122 6786638 ~ 6788943 (+) False XLOC_031812
TCONS_00062312 lncRNA downstream 513519 6787035 ~ 6788943 (+) False XLOC_031812
TCONS_00062313 lncRNA downstream 516143 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00062299 mRNA upstream 33143 6215042 ~ 6237589 (+) True XLOC_031806
TCONS_00062295 mRNA upstream 1286489 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062294 mRNA upstream 1286489 4872883 ~ 4984243 (+) False XLOC_031801
TCONS_00062296 mRNA upstream 1393556 4872888 ~ 4877176 (+) True XLOC_031801
TCONS_00062293 mRNA upstream 1727727 4539953 ~ 4543005 (+) True XLOC_031800
TCONS_00062306 mRNA downstream 217497 6491013 ~ 6541519 (+) True XLOC_031809
TCONS_00062307 mRNA downstream 388963 6662479 ~ 6666426 (+) True XLOC_031810
TCONS_00062308 mRNA downstream 505598 6779114 ~ 6795988 (+) False XLOC_031812
TCONS_00062309 mRNA downstream 505598 6779114 ~ 6795996 (+) False XLOC_031812
TCONS_00062310 mRNA downstream 507357 6780873 ~ 6796687 (+) False XLOC_031812
TCONS_00062300 other upstream 54822 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 586437 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062276 other upstream 2420490 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 2432504 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062248 other upstream 3021262 3218363 ~ 3249470 (+) True XLOC_031772
TCONS_00062321 other downstream 558530 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 606411 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062341 other downstream 1179839 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 1192757 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 1226612 7500128 ~ 7505016 (+) False XLOC_031829

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000024_06883853_06888064.mRNA True 2030 mRNA 0.39 7 CI01000024 6882818 ~ 6888123 (+)