Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062303 |
| length | 684 |
| lncRNA type | retained_intron |
| GC content | 0.47 |
| exon number | 4 |
| gene id | XLOC_031808 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 6270686 ~ 6273519 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0019941 | modification-dependent protein catabolic process | biological_process |
| GO:0022627 | cytosolic small ribosomal subunit | cellular_component |
| GO:0005840 | ribosome | cellular_component |
| GO:0015935 | small ribosomal subunit | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0031625 | ubiquitin protein ligase binding | molecular_function |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| GO:0031386 | protein tag | molecular_function |
| id | description |
|---|---|
| ko03010 | Ribosome |
| ko04120 | Ubiquitin mediated proteolysis |
| ko04137 | Mitophagy - animal |
| ko05171 | Coronavirus disease - COVID-19 |
| ko05167 | Kaposi sarcoma-associated herpesvirus infection |
| ko05131 | Shigellosis |
| ko05012 | Parkinson disease |
| ko05022 | Pathways of neurodegeneration - multiple diseases |
| ko03011 | Ribosome |
| ko04121 | Ubiquitin system |
| ko04147 | Exosome |
| id | description |
|---|---|
| ZDB-GENE-030131-10018 | Predicted to enable protein tag and ubiquitin protein ligase binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in modification-dependent protein catabolic process and protein ubiquitination. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Predicted to be active in cytoplasm and nucleus. Orthologous to human RPS27A (ribosomal protein S27a). |
| ensembl_id | ENSDART00000156817 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064803 | lncRNA | upstream | 184743 | 6085236 ~ 6086132 (+) | True | XLOC_031805 |
| TCONS_00064802 | lncRNA | upstream | 289017 | 5938465 ~ 5981858 (+) | False | XLOC_031804 |
| TCONS_00064801 | lncRNA | upstream | 289516 | 5938465 ~ 5981359 (+) | False | XLOC_031804 |
| TCONS_00062298 | lncRNA | upstream | 308920 | 5938477 ~ 5961955 (+) | True | XLOC_031804 |
| TCONS_00064600 | lncRNA | upstream | 871431 | 5198269 ~ 5399444 (+) | True | XLOC_031802 |
| TCONS_00064804 | lncRNA | downstream | 445399 | 6718916 ~ 6741408 (+) | True | XLOC_031811 |
| TCONS_00062311 | lncRNA | downstream | 513121 | 6786638 ~ 6787082 (+) | False | XLOC_031812 |
| TCONS_00064805 | lncRNA | downstream | 513121 | 6786638 ~ 6788943 (+) | False | XLOC_031812 |
| TCONS_00062312 | lncRNA | downstream | 513518 | 6787035 ~ 6788943 (+) | False | XLOC_031812 |
| TCONS_00062313 | lncRNA | downstream | 516142 | 6789659 ~ 6793176 (+) | True | XLOC_031812 |
| TCONS_00062299 | mRNA | upstream | 33286 | 6215042 ~ 6237589 (+) | True | XLOC_031806 |
| TCONS_00062295 | mRNA | upstream | 1286632 | 4872883 ~ 4984243 (+) | False | XLOC_031801 |
| TCONS_00062294 | mRNA | upstream | 1286632 | 4872883 ~ 4984243 (+) | False | XLOC_031801 |
| TCONS_00062296 | mRNA | upstream | 1393699 | 4872888 ~ 4877176 (+) | True | XLOC_031801 |
| TCONS_00062293 | mRNA | upstream | 1727870 | 4539953 ~ 4543005 (+) | True | XLOC_031800 |
| TCONS_00062306 | mRNA | downstream | 217496 | 6491013 ~ 6541519 (+) | True | XLOC_031809 |
| TCONS_00062307 | mRNA | downstream | 388962 | 6662479 ~ 6666426 (+) | True | XLOC_031810 |
| TCONS_00062308 | mRNA | downstream | 505597 | 6779114 ~ 6795988 (+) | False | XLOC_031812 |
| TCONS_00062309 | mRNA | downstream | 505597 | 6779114 ~ 6795996 (+) | False | XLOC_031812 |
| TCONS_00062310 | mRNA | downstream | 507356 | 6780873 ~ 6796687 (+) | False | XLOC_031812 |
| TCONS_00062300 | other | upstream | 54965 | 6215794 ~ 6215910 (+) | True | XLOC_031807 |
| TCONS_00062297 | other | upstream | 586580 | 5684181 ~ 5684295 (+) | True | XLOC_031803 |
| TCONS_00062276 | other | upstream | 2420633 | 3834442 ~ 3850242 (+) | True | XLOC_031788 |
| TCONS_00062273 | other | upstream | 2432647 | 3827777 ~ 3838228 (+) | False | XLOC_031788 |
| TCONS_00062248 | other | upstream | 3021405 | 3218363 ~ 3249470 (+) | True | XLOC_031772 |
| TCONS_00062321 | other | downstream | 558529 | 6832046 ~ 6832621 (+) | True | XLOC_031815 |
| TCONS_00062324 | other | downstream | 606410 | 6879927 ~ 6880049 (+) | True | XLOC_031817 |
| TCONS_00062341 | other | downstream | 1179838 | 7453355 ~ 7453831 (+) | True | XLOC_031828 |
| TCONS_00062343 | other | downstream | 1192756 | 7466273 ~ 7472497 (+) | False | XLOC_031829 |
| TCONS_00062345 | other | downstream | 1226611 | 7500128 ~ 7505016 (+) | False | XLOC_031829 |
