RNA id: TCONS_00062312


Basic Information

Item Value
RNA id TCONS_00062312
length 464
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_031812
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 6779114 ~ 6796687 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCTGGATCAGACGGGACTTCTAGAGATGAAATGTCTATCTAACCTCACGGGGTGAGAATTGATTGATATATCTTGCATGTCGTTTGATTTCCTTGGTATCAGCAGATTGTATTTTTGATTTAATGACACagcattgtattaaaatgtactaTATAGCTAAAAGTGTTTCCTATTTTTAGGGGCCACATTGTTATGGGCGATTCGTTCAACACCTCTCTGTTCAAGCAGACCTTTCAGAGAGTCTTTAACAAAGACTACAACGGAGAGTTTCGCATGGCTTTTGGTGCTACTTTGGAAGTGAAGACTTCAAGAGAATTGAAAGTATCTGGTGCGATCGGGCCATGTGTGTCACTCAACACCAAAGGACCCTGCGTTTCAGACAATGAAATGGGCGTTGGAGGAACATGCCAATGGAAGATCTGTAGTCTCTCCCCTGCCACCACCCTGGCCATGTACTTTGAAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport biological_process
GO:0048821 erythrocyte development biological_process
GO:0051216 cartilage development biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0090110 COPII-coated vesicle cargo loading biological_process
GO:0090114 COPII-coated vesicle budding biological_process
GO:0015031 protein transport biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0030127 COPII vesicle coat cellular_component
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005829 cytosol cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0070971 endoplasmic reticulum exit site cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5479 Predicted to enable GTPase activator activity. Acts upstream of or within cartilage development; embryonic neurocranium morphogenesis; and erythrocyte development. Predicted to be located in cytoplasmic vesicle; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in Cowden syndrome and congenital dyserythropoietic anemia type II. Orthologous to human SEC23B (SEC23 homolog B, COPII coat complex component).

Ensembl:

ensembl_id ENSDART00000135105

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064804 lncRNA upstream 45627 6718916 ~ 6741408 (+) True XLOC_031811
TCONS_00062303 lncRNA upstream 513518 6270875 ~ 6273517 (+) False XLOC_031808
TCONS_00062304 lncRNA upstream 513518 6271793 ~ 6273517 (+) False XLOC_031808
TCONS_00064803 lncRNA upstream 700903 6085236 ~ 6086132 (+) True XLOC_031805
TCONS_00062298 lncRNA upstream 825080 5938477 ~ 5961955 (+) True XLOC_031804
TCONS_00062313 lncRNA downstream 716 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00062315 lncRNA downstream 10348 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062317 lncRNA downstream 13585 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062325 lncRNA downstream 105285 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00064806 lncRNA downstream 418650 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062307 mRNA upstream 120609 6662479 ~ 6666426 (+) True XLOC_031810
TCONS_00062306 mRNA upstream 245516 6491013 ~ 6541519 (+) True XLOC_031809
TCONS_00062301 mRNA upstream 513516 6270686 ~ 6273519 (+) False XLOC_031808
TCONS_00062302 mRNA upstream 513519 6270732 ~ 6273516 (+) False XLOC_031808
TCONS_00062299 mRNA upstream 549446 6215042 ~ 6237589 (+) True XLOC_031806
TCONS_00062314 mRNA downstream 8577 6797520 ~ 6800387 (+) False XLOC_031813
TCONS_00062316 mRNA downstream 13199 6802142 ~ 6808510 (+) False XLOC_031814
TCONS_00062318 mRNA downstream 13639 6802582 ~ 6809598 (+) True XLOC_031814
TCONS_00062319 mRNA downstream 33649 6822592 ~ 6845993 (+) False XLOC_031815
TCONS_00062320 mRNA downstream 39224 6828167 ~ 6845993 (+) False XLOC_031815
TCONS_00062305 other upstream 513558 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062300 other upstream 571125 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 1102740 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062276 other upstream 2936793 3834442 ~ 3850242 (+) True XLOC_031788
TCONS_00062273 other upstream 2948807 3827777 ~ 3838228 (+) False XLOC_031788
TCONS_00062321 other downstream 43103 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062324 other downstream 90984 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062341 other downstream 664412 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 677330 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 711185 7500128 ~ 7505016 (+) False XLOC_031829

Expression Profile

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