RNA id: TCONS_00064806


Basic Information

Item Value
RNA id TCONS_00064806
length 834
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id XLOC_031820
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 7207593 ~ 7208629 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCTGTTCAGCGCGTCTTTCTTTAGCTTTTTGTTCATCACAGCAGGTACGCAGTTCGTGAGTTCGGTCCAGTCCGCGTGCAAACCGCAAGTCCAGCCCGTGGAGAAGCGCGAGAAGAGCCAAGACTCCGCTTTTCCGGGCCGGTGGCATGTGCACTTCTTCTGGCCGGAGCGGCAGTCGCACGGGCGCTCCAGGTGGATGTTCCGCACCAGGTGCCTCCCGAACGTGGTTCCTCCGGTCTTCTGGATGTGGAGGAAAACGATCACGTCATTCCCTTTGATGTCGAAATCCACGTGGCGCTCGAGGTCGTCCCGCGTGAAGTTGAATTTGGACTGAAATCTGAACGAAGCGTCTTCTTCGTTCTCTTCTCTTTTGACGTCTGCTGGATATTTGGAGAACGGAAAACCCTCTCCGTTGCCAAACCGACAGGACGTGCTGCCTGCTGGACAGATGTACTGATAGCCGATCATCACAAACAAAACGGTCAAAACGGGAACTAAAAGGAGTTTGTTGGATTTATCATCCATTGCAAAGACGAGGATCACGCCATTGGTGCCGCAGCCGCTGAATGAGAGCTCCAGGTGCTTATGGTGATGCTCTGATCCGGCACAGAAGCGCGTCTTAACGCGGAACACGCGAAAACGTGAGGATCTGCTTTGAGGATGAGATCCAGACACATCGTAAAAACACGTCCAGAGATCCGATCTGTCCACTGTTGCGCTGTTTTGTGATGCAGGTTCTCGGAGATGCGCTATAAGAAGTTGAGTTCCTGTTGCAacttgctgagagagagagagagagagagagagagagagaatgttaACTGTACAGTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062325 lncRNA upstream 306910 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062317 lncRNA upstream 399253 6802528 ~ 6808340 (+) False XLOC_031814
TCONS_00062315 lncRNA upstream 407335 6799291 ~ 6800258 (+) True XLOC_031813
TCONS_00062313 lncRNA upstream 414417 6789659 ~ 6793176 (+) True XLOC_031812
TCONS_00064805 lncRNA upstream 418650 6786638 ~ 6788943 (+) False XLOC_031812
TCONS_00062339 lncRNA downstream 220682 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00062351 lncRNA downstream 442098 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062354 lncRNA downstream 881794 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00064807 lncRNA downstream 1056135 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 1130642 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00062329 mRNA upstream 74062 7124070 ~ 7133531 (+) True XLOC_031819
TCONS_00062328 mRNA upstream 75567 7123980 ~ 7132026 (+) False XLOC_031819
TCONS_00062327 mRNA upstream 240005 6924637 ~ 6967588 (+) True XLOC_031818
TCONS_00062326 mRNA upstream 245398 6924637 ~ 6962195 (+) False XLOC_031818
TCONS_00062322 mRNA upstream 285303 6850821 ~ 6922290 (+) False XLOC_031816
TCONS_00062330 mRNA downstream 31774 7240403 ~ 7245216 (+) True XLOC_031821
TCONS_00062332 mRNA downstream 40902 7249531 ~ 7280299 (+) False XLOC_031822
TCONS_00062331 mRNA downstream 40902 7249531 ~ 7280299 (+) False XLOC_031822
TCONS_00062334 mRNA downstream 40934 7249563 ~ 7280299 (+) False XLOC_031822
TCONS_00062333 mRNA downstream 40934 7249563 ~ 7280299 (+) False XLOC_031822
TCONS_00062324 other upstream 327544 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062321 other upstream 374972 6832046 ~ 6832621 (+) True XLOC_031815
TCONS_00062305 other upstream 934116 6271867 ~ 6273477 (+) True XLOC_031808
TCONS_00062300 other upstream 991683 6215794 ~ 6215910 (+) True XLOC_031807
TCONS_00062297 other upstream 1523298 5684181 ~ 5684295 (+) True XLOC_031803
TCONS_00062341 other downstream 244726 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062343 other downstream 257644 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062345 other downstream 291499 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062355 other downstream 881948 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062362 other downstream 1105894 8314523 ~ 8321969 (+) False XLOC_031838

Expression Profile

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