RNA id: TCONS_00006219


Basic Information

Item Value
RNA id TCONS_00006219
length 3894
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_003152
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2685112 ~ 2690933 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTCCGGCAGGGAGCGCCGCTCGTCAGTCAGTCAGAGCAGCGTTTCTTCTCGGTTTGCTGTAGTAATGGACGGGAAGTGCAGCGCGTTGAAACTGaagaaataaataatgaggcgttCAAAACTCTTAACGTTGCAAGCTGTAAATTTTAGTCTCACATCTTCAGTCCTTGCTGCAGGTTTGAGCCTCTGCTGAGTGTAAATATTGTACGCGTTGTCAGGAGAAGCGGGAGCTGTGGTAAATCTCcagctcatcatcatcatcatcagctgcaAAAACAGAACAGCATTTCCCCATGAAGATGGACAAGATGAGCAAAACACGCAGTCAGTGATCAGTCTGGAGGAGATTTACAAGTGACATTATGAATCTTCTCCGTCTCGTGTGTCGCCATAAGACAGCGCTGGCTCTCGGCGTCCTCCTTCTGTTCGCCGTCGTGCTTTTATTCCTCGCCAAATGTACATCAGAGACGCTGAAGCCGGCTGAGTCTCCAGGAGCGGCTCCGCAAGCAGAGTCCCACCAGAAGCCGCCGGCGGGGCCCGCTCGTCCTAAAGAGCTCTCGGCGTTCCTGGTCATCCTCATCACCACCGGACCCAAATACACAGAGCGGCGCAGTATTATCCGCAGCACATGGCTGACCAAACACGACCCCGAGGTGCTCTACTGGTTCGTAATCGGCACCGAGGGATTACCAGCTGAAGATCTGCAAAATCTGGCAACCGAACAAATCCGTCACCATGACCTCCTCCTGCTCCCTGACCTCCGGGATTCATACGAAAACCTGACGCAGAAGCTGCTCCACATGTACTCATGGCTGGACCAAAACGTGGAGTTTAAATTCGTACTAAAGGCCGACGATGACACTTTCGCACGCTTGGATCTTCTGAAGGAAGAGTTGAAAGTCAAGGAACCCAAGGAGCGTCTTTACTGGGGGTTTTTTTCTGGGCGAGGAAGAGTGAAAACTGCGGGAAAGTGGAAGGAAAGTGCGTGGGAGTTGTGCGATTATTACTTACCCTACGCTTTAGGTGGCGGATATGTGCTGTCTGCGGATCTCGTGCGGTATATTCGTCTGAACGTGGGATTTTTGAAGATCTGGCAGAGCGAGGACGTGTCTTTGGGAGCGTGGTTGGCTCCGGTGGATGTGAAGCGGCTTCACGATCCGCGCTTCGACACGGAGTACAAGTCTCGCGGATGCAGCAATAAATATCTGGTCACTCACAAGCAGAGTTTGGAGGACATGCTGGAGAAACACCAGACACTGCAGAGAGACGGACGCTTGTGCAAAGAGGAGGTCAAATTGCGGTTGTCTTATATCTACGACTGGAGCGTCCCGCCGTCGCAGTGCTGCCAGCGGAAAGATGGCATCCCGTGACTCTTCACACCCAGCGTCTTATGCATTTCTTTCTTCcatgtgatatttatttatttatttattatcaatgttgtgcGTCAGCCCGCAATAGCATTACgtaacctttttaaaaatgcctTTTAAGTGAGATTGATGGGAGGTTTGTGTTGCAGGAAAGCTGCTCTTATGGAAGTTTAATGCAGTTAGTTTGGGAACGTGTGGAAGCTGATTGCCTTAAATGGTTCGTTCACTCAAACGTGTAAATTAGCCTATGAATTACGCATCCTTGGTGCGCATCCTCGGTGTATATGACTGTTCATCTGTTTCTTGACTGTCTTCTTTCAGTCGAATCCAATGTGAGTTATTACAGAAATATGATCTTGTGCTTTCCCAGCTCTACAATGGCAAAGTGCCTCATGTTTGGGTGATTAAAGGTCTCCTGTGGTGAATTGATGGATTTTTGCGTAAGAATTTCTGTTTTAACGTTATAAACTTACTAAATGAGAGACTACCTTTCCGGCAGATGATGTAGAATGTATTAAAGTTGTggtcatttaataaattaacaagtttttaccagcagatggtgctctagactagtgtttaacagcagatggtgctctaggctagtttttaacagtagacggcgctctaggctagagtttaacagatgatggcgctctaggctagtgtttaccagcagatggcgctctaggctagtgtttaacagcagatggtgctctaggctagtgtttaacagcagatggtgctctaggctatagtttaacagcaaatggtgctctaggctagtgtttaacagcagatggcgctctaggctagtgtttaacagcagatggcgccctaggctagtttttaacagcagacgccactctaggctagttttcaacagcagacggccctttagactagtttttaacagcagatggcactctaggctagtgtttaaccgcagatgccgctctaggctagtttttaaccgcagacgccactctaggctagtttttaacagcagatggcgctctaggctagtttagcACCCTCTAGACTAGCggcatctgctgttaataactagTCTAGAGCGatatctgctggtaaaaactaatCTAGAGAACTAGagtagtttataacagcagattgcactctaggccagtttttaacagcagatggcgctctaggctagtttttaaacagcagacagcgctctaagctagtttttaacaccagatggtactctaggctagtttttaaacagcagacaatgttctagactagttttaaacagcagatggcgctctaggctagtttttaacagcagatggcgctctagcctagtttttaacagcaaatggtgctctatagtctccatctgctggtaaaaactagcctagagcgtcatttgctgttaaaaactagcctgttaaaagtagcctagagcgccgtctactgttaaaaactagtctagagcgccatctgctggtaaaaactagcctggagtggcacttgctgttaaacactagtctaaaGCGCCGTCCGCTGTTAAAACTAGCTGTTAAAAGTAGCCTAAAGCgccgtctgctggtaaaaactagcctggagTTCTGAAgtaacccattttttttttcttcatttttttcttgTACTAAATTTGGCTTCAAATATCTCACATTGAATTTGACTGAAAGAAGAAAGTCACGCAGCTAGTATGCCTTTAGGATGAGTAAATCATGGGATAATTTCCATTTCTGAGTAAACTAATTCTTTAAATTTAACGAGTAGATTAACTCCTACTTTTTGAGTTGACAAAACTGTTCAAAATTAGTAGGAGTATCTGGAGGATCTGAAATTCTGTCTGCTAAAATCTTTAAGTAGACTGAACTAAGATCCCAGCCAGGTTTTCTTAGTAGCTAATTTTAGTTGCTGATTTGAACAAGCTTTGTCAACTCAAGAATGATGCGCTTATTTACTTGCTACAAAGTGAACGCACTGTTTGAGCTGTTATGCTAACAAGgctgttttacagtgcattgttGAGTGTCCTTTACTTATTCTGGTGATTGAGCCTGGGGGGTTGTGGGTAAAGTCATGTTCCTGCTGTATTGTCTGCATACTCCTCCCAGATACTTGACGTCCGCTGACAGAATTCTCTATTCATGATCCTGAGATGTTTAAACTGTTTCTGTTATAGTAAAATGACTCCTTCATAAATGTGAAGCAGGAATGGACGGGTCACACTAATGGTTTATTATTAGGAAAGATACTTGAAGAAGAGACGTTGATAAAGCTTGCTTATGCTTTTTCCCATCATTGTGATCAAGAAGCTGCAacgttttgtttgtttcttgttgttgttgctcACAAATTTgccatatgatgatgatgatgatgataaaccTGACTTGAGAGTTTGGCCACCAGGTTTGGCTGTATTTCTAGTATTTTACGTGTTGTTGTGACTGACTTCGTTGTAAATAATGTACctcaaattttattaaatgtttttttttgtttgtgccgTTTTTACA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0006024 glycosaminoglycan biosynthetic process biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0035250 UDP-galactosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
ko00532 Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate
ko00534 Glycosaminoglycan biosynthesis - heparan sulfate / heparin
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-101104-13 Predicted to enable UDP-galactosyltransferase activity. Predicted to be involved in glycosaminoglycan biosynthetic process. Predicted to act upstream of or within protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in Ehlers-Danlos syndrome spondylodysplastic type 2 and spondyloepimetaphyseal dysplasia with joint laxity type 1. Orthologous to human B3GALT6 (beta-1,3-galactosyltransferase 6).

Ensembl:

ensembl_id ENSDART00000160777

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006213 lncRNA upstream 69089 2615070 ~ 2616023 (+) True XLOC_003149
TCONS_00008515 lncRNA upstream 364757 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008514 lncRNA upstream 364757 2308209 ~ 2320355 (+) False XLOC_003140
TCONS_00008380 lncRNA upstream 370326 2308218 ~ 2314786 (+) True XLOC_003140
TCONS_00008513 lncRNA upstream 371967 2308209 ~ 2313145 (+) False XLOC_003140
TCONS_00006224 lncRNA downstream 19624 2710557 ~ 2730438 (+) False XLOC_003154
TCONS_00006228 lncRNA downstream 136620 2827553 ~ 2828675 (+) True XLOC_003156
TCONS_00008381 lncRNA downstream 239246 2930179 ~ 2930574 (+) True XLOC_003157
TCONS_00008516 lncRNA downstream 512554 3203487 ~ 3206698 (+) True XLOC_003160
TCONS_00008517 lncRNA downstream 640180 3331113 ~ 3333714 (+) True XLOC_003164
TCONS_00006217 mRNA upstream 517 2649664 ~ 2684595 (+) False XLOC_003151
TCONS_00006218 mRNA upstream 1133 2649891 ~ 2683979 (+) True XLOC_003151
TCONS_00006216 mRNA upstream 35616 2642013 ~ 2649496 (+) True XLOC_003150
TCONS_00006214 mRNA upstream 43804 2633743 ~ 2641308 (+) False XLOC_003150
TCONS_00006212 mRNA upstream 75288 2600612 ~ 2609824 (+) True XLOC_003148
TCONS_00006221 mRNA downstream 9018 2699951 ~ 2707028 (+) True XLOC_003153
TCONS_00006222 mRNA downstream 19597 2710530 ~ 2756576 (+) False XLOC_003154
TCONS_00006223 mRNA downstream 19614 2710547 ~ 2760373 (+) False XLOC_003154
TCONS_00006225 mRNA downstream 19636 2710569 ~ 2758059 (+) False XLOC_003154
TCONS_00006227 mRNA downstream 72235 2763168 ~ 2826562 (+) True XLOC_003155
TCONS_00006215 other upstream 35718 2633791 ~ 2649394 (+) False XLOC_003150
TCONS_00006199 other upstream 494382 2190621 ~ 2190730 (+) True XLOC_003138
TCONS_00006172 other upstream 1138881 1546117 ~ 1546231 (+) True XLOC_003126
TCONS_00006169 other upstream 1155785 1522179 ~ 1529327 (+) False XLOC_003124
TCONS_00006161 other upstream 1954189 730807 ~ 730923 (+) True XLOC_003118
TCONS_00006226 other downstream 54131 2745064 ~ 2747797 (+) True XLOC_003154
TCONS_00006233 other downstream 485753 3176686 ~ 3176770 (+) True XLOC_003159
TCONS_00006246 other downstream 808257 3499190 ~ 3514108 (+) False XLOC_003165
TCONS_00006254 other downstream 1274794 3965727 ~ 3968309 (+) True XLOC_003171
TCONS_00006260 other downstream 2790820 5481753 ~ 5481884 (+) True XLOC_003176

Expression Profile

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