RNA id: TCONS_00062359


Basic Information

Item Value
RNA id TCONS_00062359
length 3449
RNA type mRNA
GC content 0.44
exon number 1
gene id XLOC_031836
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8172227 ~ 8180042 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAGCCAGTCATACAAACTGGCCTCAATAGGACAACAATGGAAAGCATAAATCTTCCAACCCAAAACAGCGGTTCCAGCTTGGAAACACTAGAAACATTCTCAAACTACAATGAGAGTTTACCATCTCCTCAAATGAGCAGCCCTCCTCGTCAAGGGCGTCTAATAAAACCAAAGCCCAATTCATCTTGTCGACGGAAACGGGAGTTCATCTCCGATGAGAAGAAAGATGCATCCTACTGGGAAAAACGACGCAAGAATAACGAGGCTGCCAAGAGGTCAAGGGAGAAGCGGCGGCTCAATGATATGGTTCTGGAGAACAGGGTAATAGCACTGAACGATGAGAATGTCCGGCTGAAGACAGAACTCCTGCAACTGAAATTAAGATTTGGACTCATAAGCTCTGCTTCTTACATGGAAAAGACCCAACAGATAAGCAATGGTGCTGAGGCAGCAGCTAATGGAGCTAATGGTTCCGGAGCGACCTCTGGGAATCCGTACTTCTCAAGCAGTGGATACTCCAGTGCTTCTCAGGTCATGATGAATTCTGATTCCTCAGAGGCTGAGCAGTCAACCAGGACTGAACGGCACACAATGTTACCCAAGTACTCCCCCCGTGGATCACTGTCTGACATGTCTGATGGATCTTCAAGGGACAGTCCTGAGCCTATAAACTTTGACATCAAACACGAGAGCTCCGGAATGGACATTAACAGGCTTGAGGCAAGTGTTCTTAATGGCATGTTTAATGGCCATCAAAGTCTTGGACGACTGGAGTCCAACCAACCACAAGAAATGGAGCAGCAAGAAAGTGTCAGCAATCCAGCCCCTCCATCCGCCACACCCCAAAGAAGTGTCATTCTCTTTCGTTCTGGAAGCAGCTCCTACCCTGTTGAGAGTCAGAGGGTTGAGGATGTAGATCAGCAGGAGGCATCCCAAACACAACAAAATGGGCAAATCACTCATTTTAACCAAACAGGGTGCAATCTCCCGCTAAGACATGACGGTTTAGAGACTCTTTCAGAGGTGGCACAGCAGTTGGCCAGGAGGTCTTTGGATTCACCAAGCTATGAATTCACTAACGGAAAGGCAGATGCTGGGGAAAACAGGCGGTTTGTCATACAGCAGCAAGACCTGACCGTTCAAGGACAATGCAGAAGTCAGGTTCAAGACAGCACCCCTAATTCTTTTGCCCCAGATTTGCTCAATGAGGCTGGAAAAGCCCTTGTATACCAGCGGACAAATCCCTACCTCGGCACTCTGAACGAGGAGCCACCAGTGCTGACTTATGAAGGTTGCACAAGAGCAGATGGCTTTTACCAAGAGCACTCTTCCTCGGGGAAGGACAGTTCCTCTAGTGATGGAGACCCACGCAGCTCAGATAAGGAAGCTTCCACTGACGATGAATCTCCCTCATCCTCTTCCTCTGATATTGGTGGATATCACGCCACCCATCAGTCAGCCTCCTCGCCCACTATGGTCACCAGTGATGCTTACCAGTATGGTGACAACCAAGGTGAAATGAAAGGCACTGCTCTGCCTCACAAGCTAAGGCTCAAGTATAGAGCGCTGTCCAACGGTGGCTCGCAAGATGTCCAAGCCACCACAGCAGCTATGTCCCCCGAATCTGCACTGCCACAGCACCCATACCTGGCGTTAGCACAGGTTAACCAGCAGCAAGGCAGCAGCTTTGGAAACAAGGAGGGCGAAAGCGAGACGGCAGATGAACTTTGCACGCAACGGTCTCCTTCAAGAGACAAGGACATGGGATGGAAGGAAAGTGGGAAGAGGAGCTCAGGAGGACGAGGTAACAGAAACAAGAAACGTGACTGAAACTGGCACATTACAACGCTTAAGACAGGACTTGATAAATGTCATCTCTACCATCCAATGGAAAGTCAAAAGAAATGGTACCAGTTACTTGCATGGAAGTCTATTGCTTATTCGTAACAAGAAAGTAACTCATGTTCTTGGTTTGTTTTCTTATCAAGAGCAATTCTGTGACCTTTTAATGCAGCTCTGTTCTCTCACTCTCTTTCATAAGCACTTAACTGTAACTCAAAGTTACAAAGGGGAAACTGAGTTCTTTAAAACGATCTTTTTCCTCTGTCAAAACAAACCGACAAAACTCTGTACAGCAAACCTCGACTCCACCTTTGAATATTTACATATCTCTGCCGTGTTTAGTAGCTTAGCTATAGAAATGGGTATTTACTGACCCTTACAATTTCCGCCACAAGTTCAAGGAGTTAAAGTTCTTTCTCAATTCTGATTTCAGAAGTAAAAAAACCTCAACAGTTTATGCCTCTCCTCTGCCTTCGGACTTTAACATTATTGAAGCACTTGGATTATAATACTGTGACATGACTAAACATatcatatttcaatatattttatgaaaaaatgACAATGTCAATCTTTTAAGAGTAGAAAAGTGGGCAAAAGACAACAAACACTGTCTACTTCTTACTGTTTGAATTCCTGTATAGTCCTTTCTTAATGTCTGATGCTTCCACTATATTTTTTAAGTCGTCATCGCTATGTCACTGTATTACACCAATTGACAGACACCAGAATGCTCTCTTCATAGTGTTTGGTCATTCATAGGTCAAGGTTATCCAGTGAAAAATCATCTCTCGTCCACCGCATTACGTTGTATCACTGTAAAGGAGCCTGATGGATCGATCCTCTCCAAAGGTCACTGTGACCAacccttttttaaaaacaaaagaaaagttgCAATCTGCCTGACATTTAGCCAAATTAGAGTAAAAGCCCTTTCAGAAATGTCAAGGTGGTCTCTTCCAAGGCCTGAGTTAATATGCGGACTGTACAAAGTGTAAGATATATCATTGCCATCTCAAGATGGTTTTGTCCTCTGTGGTCAGGCTTCAGAGATGCCTCACATGCTACCTCATGAGAAGAAATGGTTGAGGTTACGCAGAACTGAAGTGTTTCTCCTTTGGTGTGTGTAGCCCATTGCATCATCGTACCCATTAACTGTTGCGTATAAAAGTTAACACACaagaaaaatgctgcaacacacAACTAAGTGTTACCGACACACAGTTTAGTCCCACTAGTCGTCTTTGTAGAATCTACCACAGCTGAAAGCTGCTTCTGCACTGAATTTTTTTCATCAGATTTTATACAAATCTGTGTTTATTGTTCCCAAACAGGTGCCTGGCACTGGCCATTATGTAAAAAGTGTACATACAAATTCTCTTTTTGAGTATTTTAAGTTTGTATCAAGTTTATTTTGGCAttctataataattattattattaatattgtattttattttatattccaaTGCTTTCCTTCTCTTTGGGTTCATATTTCTTGTGTCTGATCACCTCAATGTGATGCAGTATGTATTTCCATGTCCTGTGCATCTATTTCACCTCTGTACCCTGGTGTATTGTGTGGTATTTACTGaagttttaagt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0007623 circadian rhythm biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7677 Predicted to enable DNA-binding transcription factor activity. Acts upstream of or within circadian regulation of gene expression and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in epiphysis.

Ensembl:

ensembl_id ENSDART00000193308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062354 lncRNA upstream 82687 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00062351 lncRNA upstream 524074 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062339 lncRNA upstream 740786 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 967857 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 1275803 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00064807 lncRNA downstream 84830 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062364 lncRNA downstream 159337 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064808 lncRNA downstream 270377 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062372 lncRNA downstream 525215 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00064809 lncRNA downstream 528854 8708788 ~ 8741728 (+) False XLOC_031845
TCONS_00062357 mRNA upstream 21620 8153813 ~ 8154866 (+) True XLOC_031835
TCONS_00062356 mRNA upstream 35528 8129543 ~ 8140958 (+) True XLOC_031834
TCONS_00062353 mRNA upstream 82493 8079974 ~ 8093993 (+) False XLOC_031833
TCONS_00062352 mRNA upstream 101637 7977611 ~ 8074849 (+) True XLOC_031832
TCONS_00062350 mRNA upstream 519467 7555614 ~ 7657019 (+) False XLOC_031831
TCONS_00062360 mRNA downstream 134517 8314451 ~ 8328453 (+) False XLOC_031838
TCONS_00062361 mRNA downstream 134582 8314516 ~ 8323750 (+) False XLOC_031838
TCONS_00062363 mRNA downstream 135116 8315050 ~ 8330577 (+) True XLOC_031838
TCONS_00062365 mRNA downstream 418494 8598428 ~ 8609395 (+) True XLOC_031841
TCONS_00062366 mRNA downstream 442294 8622228 ~ 8650321 (+) False XLOC_031842
TCONS_00062355 other upstream 82687 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062345 other upstream 671470 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 703989 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 722655 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062324 other upstream 1296437 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062362 other downstream 134589 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062371 other downstream 511474 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 591542 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 1697779 9877713 ~ 9878219 (+) False XLOC_031862
TCONS_00062404 other downstream 1721190 9901124 ~ 9908762 (+) False XLOC_031864

Expression Profile

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