RNA id: TCONS_00064807


Basic Information

Item Value
RNA id TCONS_00064807
length 4177
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_031837
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8264764 ~ 8271403 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACTCATGAATATTCAGTTAAGTACCATTGCGGAAAGCAATACCACGTGCTTGGCCTGGTTAATATTTATTTCACATCACTGAATTATTTACACTTAATATAACGGCTTCGCTTCAGCCTTGATgtaataacacttcagaaacatcaaaaacatatcaaatacataaaaaagttGTCATTACTGTGAGCAAATACCACAGTATCAAACAGAAACACTGTCAGCAGGAgaataaaataattcagtaaCATTAATACAGTCAGATAGTCTTTTCtacattatatacatattataacaccaaatacacaaaaaagtaatTAGCAAGAACAAAATGAACAAAGGTTTAACACTTGGCTAATGACGTAGCATGAGGGTGCCTGGGCTATAAAAACAGTGCAAGTCAGCTCTCACtcttattttttatacaattctGTTTGTTTGCTCCACTATTCGGCTCCTCATATACTCAATTCGTTTCACCCCCAAACCCCTAAATTTTAGCCGTCTTGGGAGCTACACGGGTGACTCCAGGAGATTGATTTGACTTCTTGAGGGTGGCCATCAGTCTTTCTGGCATGAAGTATGGTCTGTCCACTGTGCCATCGTTGCGTTCAAGATCCTCCACTGTTGAAAAAGTTTGGGTTAAGACAACCAATagcataatatataataacagaAGCTGCGCATTCAATAAATCCCTGAGATGTCAACATAGAGAGAGTTCAGTTTATTAAAGCGCTGGGAGATCACATTAACAACATGCAAAGATTGAGAAAAGTGAAGCACAGAGGTAGAAAAAGAGGCAATAGAGCGGCAAACAGCGACAAATATCAGGCATTGAAAAGTTGCAATCTGTTGATACAATAGCCCATCACAGCAGACCAAAAGATATGGGCAACagctttttctttctttgctcTGTTTTTAAGTTGCCATATTTTCCATATCACGTTAGGCATAAATTTAACACAGCAAATTTTACAAAATGGCATTGGTCTTGGCTGGTATCACTGTAAACAGATGTGGGgggttttctgttgttgttgctgctgtaaaCATAGCAAtactgcaaacttttttttttttttgcattcttcAATATGCTTAAGACATTGATAAGTAACGATAATTAGGCACAAGTCGAGCACCTACATTACACTTCTACAAGTCCTTAGTTTGAAAACGTTCCACATAaatcacacaaacacagtcaCATTCTACAAGTGCTATGTAGGCATATCTAATAGGGTTTTAGGTCCACGTAACCAACTGTCGTCCATTTAATAAGCTTCtactttaaagtctgtgtgaaccggaggttgctgagacttttatttcagtatggtgacgtactttcaactgaaactgaatatcgAGTAGGGGGCAGGGCTTTTGATTGCGCATCCTTCCCTAGTTCCCTCATAGATAACAAATGTTAGAGGAGCGTGGTTAAGAATATCGCTATGCAGTTGCCATAGAAGCTATCGAGTTGACGTCAACAGAAGAACCTCTACTCCAAAcatgggttgttgctagatcagatacggttGCGGTCGTAAGTAaccaaaaatatgtattgtattttattaatgcctaccGCCTCCACAACTctcaacccaaccatcacagtaacgtaaaaacagtttTTGTCCCGAGTATtctttatgctatctattaaattacccaataaattgtattttttaacgcctacccccaccctacccctaaacccaaccgtcacggtactgtaaaaataataattattgttatacagtgtcataataaatgcTGCTATTTTGATGTGCATAATCGCACTTCCGGCcagccgcatatccgatctagactttaacCCAAACATGAAAGCAAACGGTCAGACTTTAATTGAAGATTACTAAAACAAGaacttttttttgttcagtggattaacttcaacaatttaatttaattatttaccttaagaataacaatgtgagctagcaaaataaaccgTAAATTTGATTTCATGCGAACTTAAATTAAAATAGCGTTTTTTTATAAGTTCGTATCAGTAGCCCTactcacacagtgatactggtaaatatccggaCAATTTCCAGAATGACTTTACGGATAAATTCAAAtatgtgctgttcacacaggtaaGGACATTAACCTGAATTTCTTAGGTAAGGACTGATCCGGGAAAGGACCTTTCACACATCCAcaccaaaataccggtaaattctggcATCATTAACTAAAAACGAGTTATAATCAGCCGCGCTTGTATTAAACATAAAGGAGGTCCATTTTTttcttgatggtttcacttttagaAGAgggtagccagaggtacatatgggtGCAATTCATCTTTGAAATGAATGCTTCAGGGTGGTATGAAGCCGCCGACggcttctgttttttgttttttttgcgctaccagctgaccacatACCttcgtgtggacggcttttctgccgTTACCAGTTTGCATGTTGGCTCACCGCGTACAAGGTGGAGCGAAGTTAACCGCGACAACGGGGTCAGAGTCTGGTGAACAATAGTTTaaaaaaagcaggtaaaacaagaataaaataaacaagtaaataccagGGTGAGAAGGTGGTAAGCtgtgaaaacatggtaaaaatcaggcgaccgtgaggtttttttttcctggattgcttttgaaaacgctgtaggttgggtttaggaaagggggtgggcgggtcaatcagggcttttgaaaacactatcggttgggtttagggaagggaaaAAAATTACCTACTGGGATGAATTTTGCACTCTCCAGATacgtatacaggggtacatatccacaatgagcctgggctgtCAGTTtgtcatcaaatcttgaccaatcaaatgctttctagcaAAGGACATGTTCTGCCCCCtttaagatgcttctcatttgcttttcatttgatgtgctcaaccactctcactagcCGATCTGTGAAAAAAAAggctattggctgctttttaaaaaggggaggagctacctaccgtcttcatgtttcagttgaattTATGTCAAACgctgaacaaaaataaacatttcaaagcacttcacaagacCTTTCTGTACAAGCCTGCTTCTCTCTTACTTAGTGTCAAGCCGTCCATTTTGACAAGTGATTATTACAGTTCTCAAAGCTGATTGATTGAGTAAACATTATGACTCAAATGAAGGAGGTTCTTTTCAGTATCTACTAATGGCTTCCCAAAGCCACCAAAGTGCACCATTTCCCAAATCAGTAGGCATCTTTGAAACATTGTATGAGCATTCTTACGCAGCTACTCCTGAGGGGTGAGCAGAGTATCGCTCTCCTGAGGTCCGTTTTCTTGAGGCTTGGGTTCCTCTGGTTCTGGTGCTTGCAGGTTCTCAGCCTGTGGTGGTTCTGCTTGAGCGCCTGGCTCCTCTTTGTCTTCTGCGTCAACCTCTTGTGGTCCATTTTGCTGTGGCGTTGCTTGTGTTGGTTCATGTTCTTGAGCAGTCACCTGCTCTTCAGGTTTCTCCTCAGCGACTGCAGAAGCTTCTggagcttgtgtttgtgtttcttgagGAGCTTCTTCAATGTGCGTCTCTTGATTGAGTGGTGTCTCTTCTTCTTGATCCTGTTTCAGAACAGTCTGTTGCTTGAGCTGCACCTCTCCATTCTCCTGGAGAGGGATTTCTTCTTCGGCTTGCACCTGTATGACAGGCACCTCCGCATGGTCTGTTTCTTCTATGCTTTTTTCGATAGATAAAATCTGGTGCAACTCAGGAGACATGAAAAAGGGTTTGTCGGAAGAGCCGTCATTTCTCTCCAGGTCTTCGCCTTGAGTTTGCGTTtgtatgggatgtttttttaagtGTTAGTGTTTTAGAGCGCACGTTGCAGAAAAAAGCACAAGGACGCATGATTGGACACAATCAGAAGCAGAGGAAGAGTGTGTCCACGCACATGGCATATACGCTAAAAAAGCCATGAGCGATCAGATAGGCTCCAAACACCACAGTCTGCAAATGAAGGGGATGTAATTATAACAGAAATGGGACTTGTCATATTGCAAATGAAGTATCTAGAATGTATTACTCACCAATATAGGCACCCAGTAGTAATTAAGAGCTGGCGTAACGTCCTGCGCTATCTTAATCTTGCCCGTGAAAAAGAAGAAGGAACAAATTCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062354 lncRNA upstream 170965 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00062351 lncRNA upstream 612352 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062339 lncRNA upstream 829064 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 1056135 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00062325 lncRNA upstream 1364081 6894228 ~ 6900683 (+) True XLOC_031816
TCONS_00062364 lncRNA downstream 67868 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064808 lncRNA downstream 178908 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062372 lncRNA downstream 433746 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00064809 lncRNA downstream 437385 8708788 ~ 8741728 (+) False XLOC_031845
TCONS_00064810 lncRNA downstream 438939 8710342 ~ 8997996 (+) False XLOC_031845
TCONS_00062358 mRNA upstream 84722 8172227 ~ 8180042 (+) False XLOC_031836
TCONS_00062359 mRNA upstream 84830 8176486 ~ 8179934 (+) True XLOC_031836
TCONS_00062357 mRNA upstream 109898 8153813 ~ 8154866 (+) True XLOC_031835
TCONS_00062356 mRNA upstream 123806 8129543 ~ 8140958 (+) True XLOC_031834
TCONS_00062353 mRNA upstream 170771 8079974 ~ 8093993 (+) False XLOC_031833
TCONS_00062360 mRNA downstream 43048 8314451 ~ 8328453 (+) False XLOC_031838
TCONS_00062361 mRNA downstream 43113 8314516 ~ 8323750 (+) False XLOC_031838
TCONS_00062363 mRNA downstream 43647 8315050 ~ 8330577 (+) True XLOC_031838
TCONS_00062365 mRNA downstream 327025 8598428 ~ 8609395 (+) True XLOC_031841
TCONS_00062366 mRNA downstream 350825 8622228 ~ 8650321 (+) False XLOC_031842
TCONS_00062355 other upstream 170965 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062345 other upstream 759748 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 792267 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 810933 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062324 other upstream 1384715 6879927 ~ 6880049 (+) True XLOC_031817
TCONS_00062362 other downstream 43120 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062371 other downstream 420005 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 500073 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 1606310 9877713 ~ 9878219 (+) False XLOC_031862
TCONS_00062404 other downstream 1629721 9901124 ~ 9908762 (+) False XLOC_031864

Expression Profile

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