Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062362 |
| length | 834 |
| RNA type | processed_transcript |
| GC content | 0.50 |
| exon number | 8 |
| gene id | XLOC_031838 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 8314451 ~ 8330577 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046949 | fatty-acyl-CoA biosynthetic process | biological_process |
| GO:0033539 | fatty acid beta-oxidation using acyl-CoA dehydrogenase | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
| GO:0000062 | fatty-acyl-CoA binding | molecular_function |
| GO:0016491 | oxidoreductase activity | molecular_function |
| GO:0050660 | flavin adenine dinucleotide binding | molecular_function |
| GO:0003995 | acyl-CoA dehydrogenase activity | molecular_function |
| GO:0004361 | glutaryl-CoA dehydrogenase activity | molecular_function |
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1855 | Predicted to enable fatty-acyl-CoA binding activity; flavin adenine dinucleotide binding activity; and glutaryl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation using acyl-CoA dehydrogenase and fatty-acyl-CoA biosynthetic process. Is expressed in alar plate midbrain region; eye; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in glutaric acidemia I. Orthologous to human GCDH (glutaryl-CoA dehydrogenase). |
| ensembl_id | ENSDART00000134245 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00064807 | lncRNA | upstream | 43120 | 8264764 ~ 8271403 (+) | True | XLOC_031837 |
| TCONS_00062354 | lncRNA | upstream | 220724 | 8090423 ~ 8093799 (+) | False | XLOC_031833 |
| TCONS_00062351 | lncRNA | upstream | 662111 | 7650727 ~ 7652412 (+) | True | XLOC_031831 |
| TCONS_00062339 | lncRNA | upstream | 878823 | 7429311 ~ 7435700 (+) | True | XLOC_031826 |
| TCONS_00064806 | lncRNA | upstream | 1105894 | 7207593 ~ 7208629 (+) | True | XLOC_031820 |
| TCONS_00062364 | lncRNA | downstream | 17302 | 8339271 ~ 8346941 (+) | True | XLOC_031839 |
| TCONS_00064808 | lncRNA | downstream | 128342 | 8450311 ~ 8453642 (+) | True | XLOC_031840 |
| TCONS_00062372 | lncRNA | downstream | 383180 | 8705149 ~ 8871084 (+) | False | XLOC_031845 |
| TCONS_00064809 | lncRNA | downstream | 386819 | 8708788 ~ 8741728 (+) | False | XLOC_031845 |
| TCONS_00064810 | lncRNA | downstream | 388373 | 8710342 ~ 8997996 (+) | False | XLOC_031845 |
| TCONS_00062358 | mRNA | upstream | 134481 | 8172227 ~ 8180042 (+) | False | XLOC_031836 |
| TCONS_00062359 | mRNA | upstream | 134589 | 8176486 ~ 8179934 (+) | True | XLOC_031836 |
| TCONS_00062357 | mRNA | upstream | 159657 | 8153813 ~ 8154866 (+) | True | XLOC_031835 |
| TCONS_00062356 | mRNA | upstream | 173565 | 8129543 ~ 8140958 (+) | True | XLOC_031834 |
| TCONS_00062353 | mRNA | upstream | 220530 | 8079974 ~ 8093993 (+) | False | XLOC_031833 |
| TCONS_00062365 | mRNA | downstream | 276459 | 8598428 ~ 8609395 (+) | True | XLOC_031841 |
| TCONS_00062366 | mRNA | downstream | 300259 | 8622228 ~ 8650321 (+) | False | XLOC_031842 |
| TCONS_00062367 | mRNA | downstream | 304458 | 8626427 ~ 8650321 (+) | False | XLOC_031842 |
| TCONS_00062369 | mRNA | downstream | 308386 | 8630355 ~ 8650321 (+) | False | XLOC_031842 |
| TCONS_00062368 | mRNA | downstream | 308386 | 8630355 ~ 8650321 (+) | True | XLOC_031842 |
| TCONS_00062355 | other | upstream | 220724 | 8090577 ~ 8093799 (+) | True | XLOC_031833 |
| TCONS_00062345 | other | upstream | 809507 | 7500128 ~ 7505016 (+) | False | XLOC_031829 |
| TCONS_00062343 | other | upstream | 842026 | 7466273 ~ 7472497 (+) | False | XLOC_031829 |
| TCONS_00062341 | other | upstream | 860692 | 7453355 ~ 7453831 (+) | True | XLOC_031828 |
| TCONS_00062324 | other | upstream | 1434474 | 6879927 ~ 6880049 (+) | True | XLOC_031817 |
| TCONS_00062371 | other | downstream | 369439 | 8691408 ~ 8691993 (+) | True | XLOC_031844 |
| TCONS_00062373 | other | downstream | 449507 | 8771476 ~ 8771596 (+) | True | XLOC_031846 |
| TCONS_00062400 | other | downstream | 1555744 | 9877713 ~ 9878219 (+) | False | XLOC_031862 |
| TCONS_00062404 | other | downstream | 1579155 | 9901124 ~ 9908762 (+) | False | XLOC_031864 |
| TCONS_00062432 | other | downstream | 2545055 | 10867024 ~ 10867141 (+) | True | XLOC_031883 |
