RNA id: TCONS_00062364


Basic Information

Item Value
RNA id TCONS_00062364
length 4681
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_031839
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8339271 ~ 8346941 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGATCTTCAAACCTCCACCACTTACCTCACAGTCAGTCTGTCCATTCAAACAGAGGAAACGGGAAAACACAGTCCGCGTCCTTCGATGAGTCCTGATTTAAACTTTTTATCTAACTGAACAGTTTAAAACGACATGATGCGTCGTTTCTCTTCGACGACTGGACGCTCAGTTAGAAAGTTAAACTTGGGATAAACTGCCTGGAGGACGAGTGCAATAAAGGAACTTGCGTTATCACTGAAATTACACAAGCATGAATGCGATCAGGCTGAACGCGTCCATGTCCGAGAACTCAATCTATCGTTTTGCGGTTTACGAGAACCCGCTTTATGAGGAGTACAAACCCCCGGCCAGGGACCTCATCCAGCTGCCCAGAGCCCTGCTGTACCTGCTCATGGCCGCCGTGGTGGTGGTCGCCGTTGCATATGCCATCGTGGGACATTTAATCAAAGACCTCGCGCATGACATCTTAGattgGGTTTTGGGTCCTGATGAGGAGATGTTAAAGGCCAACAGTGAGGCGGGTGATAACGGTTCAACACACATGCCCCAAGGCCTCACTCACTCCCACCCCAACGCCTTCCACGTGTGGGATCAGGACGACGTGGTCATCCCGCTGTCCCCGGAGGACAGTCCTCAGAACAGCCCTCTTCTGGCCGTCATCCCATTCATCCCTCACTTCTTTCCAGCCTCTCACAGTGTGCTCAACAGCCCCTCACTGCCACAGCCAGGAGAAAACAGGAGTCCCACTAAAACCACGCAAGACGCCTACGTCTTTCCTACACCCAAAATCACCAGACAAAGCTCCACTTTTTCACATCATTCCGTATCATTCCACGACATGTAAAGGTTACATGACTGAACGCAAACTAAAGTGAAGTATATAAAAAACATACACTACCTGAgtagtcttgtcgttgatcccagttgtaagagcaacaaaaaatgAGGAAAAGTGGATCCTGCATGGACCCAAGTaacatagaaatcagtcaagtttggtgaaggaaaaatcatggtttggggttacattcagtatgcaggcgtgtgagagatctgcagagtggatggcaaaatcaacagcctgaggatgtaaagacatttgtgctgcccattacattacaaaacacaggagagggcaaattctttagcaggatagtgctcctcatacttcagcctccacatcaaagttcctgaaagcaaagaaggtcaaggtgctctagcaTTGGTCAGCCCAGTCATCTGACATAACTATTATTGagaatgtctggggtaagatggagaaggCATTGGAGAtcaatccaaagaatcttgatgaactctgggagtcctgcaagaacccttactttgccgttccagatgactttattaataagttatctgagtcattgcagagatgtatggatgcagtcctccaagctcatgggagtcatacacaatattaattctttttccactgcaccatgactttatattttatactgtacattatttctgttgagtgtcaagacttttgtctcgGCAAAGGCAGAACttattgtcttaattaaataataaaaaatcaagacatgatcatactttattgtggtaaaataagtgtaatctagaggcctttgcctttcatataaaccacttctgataccaaatgatcaaatagaagtcaagttgttatttgttgttcctaaaatgtgTATAggcaagacttttatcaggtagtgtacatataataattggtaaaactttacaataaggttccataTGGCAGATAAttgataacaaaaaaaaagctcgcaaaaaaagtttttgtttcagAAAGCTTGACAGATTGGTCTGATTCTGAAATAGTGTTCTGGGGCAATGCTGTGGGTTTTGAGTGTAAGACAAAATTGATCTGGCTATTTAATGTACATTTTGACCATGGCCAATTTTTGCGCAGTATATTAAATTTCACCAGACACTATTGAGTACTCTTAAAACACTTGAAATATGCTAAATATTTATGGGAGCATTTTGTGATATTATAAGCTCAACTCTGGTCGCTATTCACTCATCCGTTAtaaagatgaaaataaaaatcttttaaatctaCAGtccaaaaaaggaagaaagaattaaaacaaaacaagagaagagaagagagtaAATGACCACTTTATTTCAAGTTTTGTGGTGAACTTTCTCTTTagttggtaaaataaataatacattataaaaaaaatacaagttaatattattaactttatatattgttatttatatataaaatataactttATATTACTGctaatatttattgaaaatgaactTACAATGAACAGTTATCTGTCattagatgaataaatactgtaacaatTCAACAACCTGGATTTCATAACAGATTTGAgcaaaattgaaatatttttttgatgTGGACTCTACAAAGACTATTGCAAAATCATGCTCTATTCCATTAACCAATTTAATACACGTAAAACAACTCTTCCAACTCACGTCACAAAAGTTGTGACAAGAAGTTTACATAGCCattatattggtaacactttagtttaggtcacaattcatgccaTTAGCTACTGATTTATTATCATTAAGATATTAATTGTTCACtaattataaattcattcatttattcattttcttgtcggcttagtccctttattaatctgtggtcaccacagcggaatgaaccgccaacttatccagcacctttttacgtagcggatgcccttccagccgcaacccatctctgggaaatagtagttataaagtacgatcttattctgcatccatACCCAAAACCTAAGCCCAACCTTACTAACTAATaaaaaacagctaattagtagttcatTAAGCTAGTTGTGTTCGTTATTGGTTTGTTATtaccgtgaattgtgacctaaactaaagtgttaccattattttTTAATCGAAGGAGACAGGGGTGTTATATTTAGGTGTAATTATTGAATAATGTCATCTGCGAACTGTGGATTCAGATTTGTTTTGGATTAGCAGTTCAAACTTTTTTGAGTCAGGGAGCCAGTTTCTACAAATGAACGCATAGACAAACCTGTAAAGAATGATCAGACATTTTACATACGTCAAGTATCCagtaaatgtgaaaaatatttccATTGCAGTTTTGAATCTcctgtaaaaaaattttttttttgagaacttGCTGCAAATTCATTAGATATTTTCATTCACGCAATATGACACTAAGGTAATGAAAATGCAGCTAATgttaattacataattaattaaTGGAACATTATTGTAAATGATTACCAAACAGCTCCCCTAAAAATGaaactgtcatcatttatgtAGGatgttatattcattcattcattttgttgaattatttattttaagtaatgaTCGAACATATTCAGCTTAGCATGATCCATTTCTTTAAATAGAATTAAAAAATAGATGGAACATTTTCTTTGACAAACACCCAACGAGGGTGTTGACTACATTTACCATCGCACCCTTTGCTTTTCTACTCGTCTGCAAAAGCTGGGCTTTGTCCTGTGGAGTGTGTGAGGATCAGTGACCTGTCCTCAAAATAGGTGCTGGTGACCACAAACAACCTCAATAAGCAGAGAGCCGTATCAGTCCAAGCCGCATTACCGGAACGTGGTTGCCCGGTAAAACAGGGACAAGGCAGGACTGCAAAATCACGTCTGTAGGATTGTGCCAATTCAGGAGAAGCCTTCCCTCCTGGAGCCAAAATGCATCCTCGGAACATATCTGAACCATCGGATCGTTCACTTTGACGCAGGATAACCAGCGTTTGCAGTTCATGGATTTGCACGGAAATATTTTCGATTTTGTGCTTTATTTCAATAACCAGTGAAACTGGATTGGATTCAAAATCCAAAGTGTTACCGTCAAGAAACATTGCAGGAGTGTGTCCATGCTCCTAAAtaaacactttcaaagtgttAAATGCACGCAaataaacaaaagtctttctttCAAAAGGACTTTTTATTTTCAACAAACATTGTTAATAGTGACACCGCTGGTCATTAAGTGAACTGCAGCCAGCAACTTATTGTGCACGGAGACTGAATGAGATTCAATGTCCTAAAATGTTCAAAGGGGGTTAAAAAGAAGTTGGAAACGCTGTGATATAATGATAAAGAACATGTGAAGAGCAACATTTATGAATATGTATATAGTATGTGTTTCCTCTCTATAACATAAGCACAAAACACAACTGGTGAGAAAACAGCAGTAAAGAAAGCATCTGTTCATAGTGATATAGATATGTTTGCTCAAGCTGTGAAACTCACCATCAGTGTCAACGTCATTTAAATGACAAAGTCTGTAATGATTACAGTAGTGATTATTAATGATATATCTATAATGATATATTCACAGGGGTGCACTTAATGGTCGGAATACACGATTTAAATGAAAATTGTGCACTATATACGGCACTAGTGAAGCACTTTTGTGGACCAATTCCGCTTCCTCATGAATACATATGAGGAACAAGCACCAACTCCAGCTTGATGTTGAGAACATTGATGATGTGCTCCCCTGTATATACAGATGCTTTTTATTCATCAAACATGGATATTATTGTACAGAATACCTGTATCTGCATTATCTTAAGCATTTCATGTATCATAGAATGcaaataaatatcaattaataCTTAAAGT

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009314 response to radiation biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0009449 gamma-aminobutyric acid biosynthetic process biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0099003 vesicle-mediated transport in synapse biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0070032 synaptobrevin 2-SNAP-25-syntaxin-1a-complexin I complex cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0004351 glutamate decarboxylase activity molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00064807 lncRNA upstream 67868 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062354 lncRNA upstream 245472 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00062351 lncRNA upstream 686859 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062339 lncRNA upstream 903571 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00064806 lncRNA upstream 1130642 7207593 ~ 7208629 (+) True XLOC_031820
TCONS_00064808 lncRNA downstream 103370 8450311 ~ 8453642 (+) True XLOC_031840
TCONS_00062372 lncRNA downstream 358208 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00064809 lncRNA downstream 361847 8708788 ~ 8741728 (+) False XLOC_031845
TCONS_00064810 lncRNA downstream 363401 8710342 ~ 8997996 (+) False XLOC_031845
TCONS_00064601 lncRNA downstream 562765 8909706 ~ 8997994 (+) True XLOC_031845
TCONS_00062363 mRNA upstream 8694 8315050 ~ 8330577 (+) True XLOC_031838
TCONS_00062360 mRNA upstream 10818 8314451 ~ 8328453 (+) False XLOC_031838
TCONS_00062361 mRNA upstream 15521 8314516 ~ 8323750 (+) False XLOC_031838
TCONS_00062358 mRNA upstream 159229 8172227 ~ 8180042 (+) False XLOC_031836
TCONS_00062359 mRNA upstream 159337 8176486 ~ 8179934 (+) True XLOC_031836
TCONS_00062365 mRNA downstream 251487 8598428 ~ 8609395 (+) True XLOC_031841
TCONS_00062366 mRNA downstream 275287 8622228 ~ 8650321 (+) False XLOC_031842
TCONS_00062367 mRNA downstream 279486 8626427 ~ 8650321 (+) False XLOC_031842
TCONS_00062369 mRNA downstream 283414 8630355 ~ 8650321 (+) False XLOC_031842
TCONS_00062368 mRNA downstream 283414 8630355 ~ 8650321 (+) True XLOC_031842
TCONS_00062362 other upstream 17302 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062355 other upstream 245472 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062345 other upstream 834255 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 866774 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 885440 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062371 other downstream 344467 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 424535 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 1530772 9877713 ~ 9878219 (+) False XLOC_031862
TCONS_00062404 other downstream 1554183 9901124 ~ 9908762 (+) False XLOC_031864
TCONS_00062432 other downstream 2520083 10867024 ~ 10867141 (+) True XLOC_031883

Expression Profile

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