RNA id: TCONS_00064808


Basic Information

Item Value
RNA id TCONS_00064808
length 510
lncRNA type antisense_over
GC content 0.35
exon number 2
gene id XLOC_031840
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 8450311 ~ 8453642 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgaatacagTGTGACTTTATTAATCAAACGCAGGTATAAAAAGTTGTTTTAATAACGTGTACCAAACTATTTCGCAAGAACACTACAGGGATTTTGAACTGGATTTTACTTAAAACCTTAAAAGGCCTGCAAATTGGTGAAAACAAATCAGaaatcacacaaaaaacaacagatGTGGAAATAAATTCCACATACAACATTCTGGAAAGGTCTGACGCTAGAGAATACAACATCATCTACTCCAACCTGACACCAGATCACAGTGAACATGTAATAGCATCATGTAAACACACAAGAACATGTAATAGTATCAAACTGTAGACCCATTTTACACGTGAAGACATAGGGAAAAAATCTGTTATAGTAAGACAGTAAACGTTCACCTAAGATCACTTGACGTCACCTGACTGCTCTGTAATGCTGGTTTCTGtttatgctgcaaaaatcctgaaaCTATTTCCTGAACACatataaagaaatctgtttttttgGCATTGAAAATGACACTGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062364 lncRNA upstream 103370 8339271 ~ 8346941 (+) True XLOC_031839
TCONS_00064807 lncRNA upstream 178908 8264764 ~ 8271403 (+) True XLOC_031837
TCONS_00062354 lncRNA upstream 356512 8090423 ~ 8093799 (+) False XLOC_031833
TCONS_00062351 lncRNA upstream 797899 7650727 ~ 7652412 (+) True XLOC_031831
TCONS_00062339 lncRNA upstream 1014611 7429311 ~ 7435700 (+) True XLOC_031826
TCONS_00062372 lncRNA downstream 251507 8705149 ~ 8871084 (+) False XLOC_031845
TCONS_00064809 lncRNA downstream 255146 8708788 ~ 8741728 (+) False XLOC_031845
TCONS_00064810 lncRNA downstream 256700 8710342 ~ 8997996 (+) False XLOC_031845
TCONS_00064601 lncRNA downstream 456064 8909706 ~ 8997994 (+) True XLOC_031845
TCONS_00062375 lncRNA downstream 662568 9116210 ~ 9122999 (+) True XLOC_031847
TCONS_00062363 mRNA upstream 119734 8315050 ~ 8330577 (+) True XLOC_031838
TCONS_00062360 mRNA upstream 121858 8314451 ~ 8328453 (+) False XLOC_031838
TCONS_00062361 mRNA upstream 126561 8314516 ~ 8323750 (+) False XLOC_031838
TCONS_00062358 mRNA upstream 270269 8172227 ~ 8180042 (+) False XLOC_031836
TCONS_00062365 mRNA downstream 144786 8598428 ~ 8609395 (+) True XLOC_031841
TCONS_00062366 mRNA downstream 168586 8622228 ~ 8650321 (+) False XLOC_031842
TCONS_00062367 mRNA downstream 172785 8626427 ~ 8650321 (+) False XLOC_031842
TCONS_00062369 mRNA downstream 176713 8630355 ~ 8650321 (+) False XLOC_031842
TCONS_00062368 mRNA downstream 176713 8630355 ~ 8650321 (+) True XLOC_031842
TCONS_00062362 other upstream 128342 8314523 ~ 8321969 (+) False XLOC_031838
TCONS_00062355 other upstream 356512 8090577 ~ 8093799 (+) True XLOC_031833
TCONS_00062345 other upstream 945295 7500128 ~ 7505016 (+) False XLOC_031829
TCONS_00062343 other upstream 977814 7466273 ~ 7472497 (+) False XLOC_031829
TCONS_00062341 other upstream 996480 7453355 ~ 7453831 (+) True XLOC_031828
TCONS_00062371 other downstream 237766 8691408 ~ 8691993 (+) True XLOC_031844
TCONS_00062373 other downstream 317834 8771476 ~ 8771596 (+) True XLOC_031846
TCONS_00062400 other downstream 1424071 9877713 ~ 9878219 (+) False XLOC_031862
TCONS_00062404 other downstream 1447482 9901124 ~ 9908762 (+) False XLOC_031864
TCONS_00062432 other downstream 2413382 10867024 ~ 10867141 (+) True XLOC_031883

Expression Profile

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